Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1215 ATGGCAGGTGTCTCCCTGGTCTCAGCAGCCGCAAGAAGGCTTGAGGGAAAAGTAGCCCATATCACTGGTGGTGCTAGCGGCATAGGTGAAGCCACTGCAAGACTCTTCTCCAAGCATGGAGCACATGTGGTGATAGCTGATATCCAAGACGATTTGGGTCACTCGGTTTGCAATGACTTGGATTCATCATCCTCAGCTTCCTATGTTCATTGTGACGTGACGGATGAAAAGCACATTGAAGATGCGGTGAACACAGCGGTTTCCAAGTATGGGAAACTAGATATCATGATGAATAACGCTGGCATATCTGAAGAGATCAAAACAAGCATACTTGACAACCAAAAATGTGATTTTGAGAGAGTCATTAGTGTTAATTTGGTTGGTGCTTTTCTTGGAACAAAGCATGCTGCAAGGTTCATGATTCCTGCTAGAAGGGGTAGCATAATTAACACGACTAGTGTTTGTGGAAGAATAGGTGGGGTGGCTCCACATGGGTACACAAGTTCCAAACACGCCCTTGTGGGACTGATGAGAAACACTGCGGTGGAGCTTGGGCAATTTGGTATTCGAGTAAATTGCTTGTCCCCTTATGTGGTTGCTACCCGGTTGACTTTGAAGCATATGAATGTTGATGAAGAAAATGTCGGTGAGATTTATTCCAACCTAAAAGGTGCTCATCTTGTGCCTAACGATGTGGCCCAAGCTGCACTCTTTTTGGGTGGCGACGAGTCCAAGTATGTTAGTGGTCATGATCTTGTCATAGATGGAGGCTTCACTGTTGTAAATAATGGGTTTTGTATGTTTGGCAAATCTGAGTAA 819 0.4493 MAGVSLVSAAARRLEGKVAHITGGASGIGEATARLFSKHGAHVVIADIQDDLGHSVCNDLDSSSSASYVHCDVTDEKHIEDAVNTAVSKYGKLDIMMNNAGISEEIKTSILDNQKCDFERVISVNLVGAFLGTKHAARFMIPARRGSIINTTSVCGRIGGVAPHGYTSSKHALVGLMRNTAVELGQFGIRVNCLSPYVVATRLTLKHMNVDEENVGEIYSNLKGAHLVPNDVAQAALFLGGDESKYVSGHDLVIDGGFTVVNNGFCMFGKSE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1215 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Apr3g1215 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 IPR002347 -
Apr3g1215 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Apr3g1215 272 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Apr3g1215 272 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Apr3g1215 272 PRINTS Glucose/ribitol dehydrogenase family signature 140 156 IPR002347 -
Apr3g1215 272 PRINTS Glucose/ribitol dehydrogenase family signature 166 185 IPR002347 -
Apr3g1215 272 PRINTS Glucose/ribitol dehydrogenase family signature 187 204 IPR002347 -
Apr3g1215 272 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
Apr3g1215 272 PANTHER MOMILACTONE A SYNTHASE 6 265 - -
Apr3g1215 272 Pfam Enoyl-(Acyl carrier protein) reductase 23 259 - -
Apr3g1215 272 Gene3D - 4 269 - -
Apr3g1215 272 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 261 IPR036291 -
Apr3g1215 272 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 6 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1215 Apr-Chr3 26669795 26689300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1215 14 260 Acyl Lipid Metabolism Gene Families AT3G55290 34.766 1.42e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1215 - - gmx:100783169 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1215 3 26669795 26689300 Apr3g1215 3 26669795 26689300 ECH