Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1207 ATGGCTATTGATGGAGTTGCCCCACGTGCCAAAATGAACCAACAAAGATCAAGACGTTTTCAAACTTCTAAGGACAATAAAATTCGTGAAGCTGAGGAAGAAAGATTGCGAAAGCAATTTGAAATGGAAGGCAAACAAGTTCTTCCTAAGCAAGAATCTGAAGTGTCAGATTCTAATGTCATAACACCAGGCACAGAGTTCATGCATGAACTCTCAAAGGCCCTTAAAAGCTATATCTCTTCAAGAATAAGCGGTGATTCATTATGGAACTATGTTATGGATGCTGATCTAATAATGCTTGCAATGGCAACTCATGAGCCCCATTTTTCAGTATTAAGAGAGGATGTACCTATTCAGCAGCTGCAGCAGCAAAAAATTGTTGCTAAGCCTTTCAAGTTTTTGCATATTTGGTTGTTGAGGGAATATCTTGAGATAGACATGAAGGTAGAAGATCCTCCCAAAAATTTCAGCTTTGAATTGGATCGGATCATTGATGATTTCATCTTCATGTGCTTTTTTGCTGGAAATGATTTTCTACCCCACATGCCAACTTTGGAAATTCACGAGGGGGCTATTGATTTACTGATGACTGTTTACAAGAAAGAATTCAATAATCTTGGAGGATATCTTGTCGATATGAGCCGGATTGGTGAGAAAAATGCTGCTTTTATTAAGTTATCAAGAGTTGAAAAATTTATACTTAAGGTTGGCACCTACGAAGAGAAAATATTTAAGAAAAGATCCGACATTAGGGACCGGCAGTTGAGAAGGCTTATTAATGATTATGAGGATGCCAAGCAGGAAGAAAAGAATGTAACATGTCACTCTGTTCTTGACAATGAAAGTACTTCTGATTGTGCTCTTCTAATTTGTAAGGCCCCAGCTTCCAAAGAGGTTTCTGTTCCAGCTACATCTGCTGAAATTTTTCAGAACACAAAGGATTTAAGAGATGAATTAAGGAAATGTATGAGAGAAAAATGTAACTTGTTTAAGAGTGGGGAGTACCTCATTGACAAGATAAAACTGGGAGCAGCTAGCTACAAAGAAAGGTATTATAAAGTGAGGTTTTTTGTAGAGGGCCCTACTGACATTGAGTGCAAAAGGAAAGAAATAGTCCAAAAGTACACAGAAGGATTGTTGTGGGTTCTTCAATACTATTTTTCTGATGTTGCTTCGTGGACATGGTTTTATCCATTCCACTATGGTCCATTTGCTTCGGACTTGAAGGGAATGGGTCAGGTGAGGGTAAAATTTGAAAAAGGTGTCCCATTCTTACCACTTGATCAACTTTTAAGTGTGCTGCCCCCTCAAAGTGCTCATGCACTTCCAAAAGCCTATGCACAATTAATGCTGGATGAACATTCAAGAATATTAGACTTTTATCCTCAGGATTTTGAAGTTGACCTAGAAGCTAAGCGATTCTTGTGGCAGGGTATCTGCAAACTTCCATGGATAGAAGAAAGCCGGCTTTTGGCTGAAACCGTAGATCTCAAAAATCAATTATCTGCAAATGAAGCCATAAGAAATTCAGTCAAACTTGATTGCTTGTTTGTTAGAAGGTCTAACAAATTAGTGGAGAAAATATGTTCCCTTTGTCTCGGGGAAAATTCATCTTACAAGTTGAACATGAGAATATGTGATGGCATTGGGGGTATCATAAGTCTTTGCCATGAAGGTGTTGACAAGCCTTGCTTGGGGATGGAGATTTGTGACAACGAAAAAACAAATTGTGTCCTATATGTCTATTATGAAGTGCCTGCTGGTAATCATATTCCTCGTTTATTATCTGGTGTAAATCTTCCAGAGAAGACAATCTTTGGGGGTGACATTATGGAAACAGAACTCTGGCATGAGCGGCAGAACCATAGTCGTTTTGAGAGGGTGCAGAATCAAGTCAGATGGAGGAGTGAACACACAGAGAGAAGCACTTCAAAGTTTTCTCCAAATGCAACTACTCATCATACAAGAAACTTTTCATCTAATATGCCTCCTGAAGTCATGCACAAAGGTGCTACTGGTGTTGGATGGAGTGTAGGTAGAGGCAAAGCATGCAATAGTTCCAACGTGAGAGGAATTGATGCAATGTCCAGTCAAAGAATGCCATCATTGTCTCCTTTTCATAAACAACATAAGGATGCAGGATCTTATCATGTCACTACTACTAGAGACATAAGATCACAACACTTTGTGGACAACTTTAGACAACTCAGAATATCAGAGTCTAATCATTTGCCAAGGCCTGGTGACAGATCTCAATTTCAGCCATATAATAATGGTTACACAAATCAGTCAACAAATCCTCCTTATCATCAAGGTTCACAATCTGAGATCAGGCTTCAAAATGGCTCCAGTAGAGTTAATTCATGGAAGAGTGCTTCCACAAACAGCTCATTGCGACCTCAATGGAATGGTGCAAAGTCTTACCAAGTGAAAGATCAAAATCGTTGGTAA 2451 0.39 MAIDGVAPRAKMNQQRSRRFQTSKDNKIREAEEERLRKQFEMEGKQVLPKQESEVSDSNVITPGTEFMHELSKALKSYISSRISGDSLWNYVMDADLIMLAMATHEPHFSVLREDVPIQQLQQQKIVAKPFKFLHIWLLREYLEIDMKVEDPPKNFSFELDRIIDDFIFMCFFAGNDFLPHMPTLEIHEGAIDLLMTVYKKEFNNLGGYLVDMSRIGEKNAAFIKLSRVEKFILKVGTYEEKIFKKRSDIRDRQLRRLINDYEDAKQEEKNVTCHSVLDNESTSDCALLICKAPASKEVSVPATSAEIFQNTKDLRDELRKCMREKCNLFKSGEYLIDKIKLGAASYKERYYKVRFFVEGPTDIECKRKEIVQKYTEGLLWVLQYYFSDVASWTWFYPFHYGPFASDLKGMGQVRVKFEKGVPFLPLDQLLSVLPPQSAHALPKAYAQLMLDEHSRILDFYPQDFEVDLEAKRFLWQGICKLPWIEESRLLAETVDLKNQLSANEAIRNSVKLDCLFVRRSNKLVEKICSLCLGENSSYKLNMRICDGIGGIISLCHEGVDKPCLGMEICDNEKTNCVLYVYYEVPAGNHIPRLLSGVNLPEKTIFGGDIMETELWHERQNHSRFERVQNQVRWRSEHTERSTSKFSPNATTHHTRNFSSNMPPEVMHKGATGVGWSVGRGKACNSSNVRGIDAMSSQRMPSLSPFHKQHKDAGSYHVTTTRDIRSQHFVDNFRQLRISESNHLPRPGDRSQFQPYNNGYTNQSTNPPYHQGSQSEIRLQNGSSRVNSWKSASTNSSLRPQWNGAKSYQVKDQNRW* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1207 816 Pfam XRN 5'-3' exonuclease N-terminus 1 90 IPR004859 GO:0003676|GO:0004527
Apr3g1207 816 Pfam XRN 5'-3' exonuclease N-terminus 91 115 IPR004859 GO:0003676|GO:0004527
Apr3g1207 816 Gene3D - 1 59 - -
Apr3g1207 816 Gene3D - 90 223 - -
Apr3g1207 816 MobiDBLite consensus disorder prediction 740 816 - -
Apr3g1207 816 MobiDBLite consensus disorder prediction 643 662 - -
Apr3g1207 816 MobiDBLite consensus disorder prediction 635 664 - -
Apr3g1207 816 PANTHER 5'->3' EXORIBONUCLEASE 91 640 IPR027073 -
Apr3g1207 816 PANTHER 5'->3' EXORIBONUCLEASE 1 92 IPR027073 -
Apr3g1207 816 CDD PIN_XRN1-2-like 1 143 - -
Apr3g1207 816 Pfam Xrn1 helical domain 158 609 IPR041412 -
Apr3g1207 816 Gene3D - 415 511 - -
Apr3g1207 816 PIRSF Exonuclease_Xrn2 1 93 IPR017151 GO:0004534|GO:0005634|GO:0006139
Apr3g1207 816 PIRSF Exonuclease_Xrn2 90 128 IPR017151 GO:0004534|GO:0005634|GO:0006139
Apr3g1207 816 PIRSF Exonuclease_Xrn2 119 814 IPR017151 GO:0004534|GO:0005634|GO:0006139
Apr3g1207 816 PANTHER OS11G0157000 PROTEIN 1 92 - -
Apr3g1207 816 PANTHER OS11G0157000 PROTEIN 91 640 - -
Apr3g1207 816 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1207 Apr-Chr3 26613436 26619027 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1207 - - gsj:114379404 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1207 3 26613436 26619027 Apr3g1207 3 26613436 26619027 ECH