Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1163 ATGGTGGTAAACCTCTCTCCCTCTCCACCTTCACATTCCAGTTCTATCATCAGATTGGCCAATTCAAAGTCACCCATCTCAGAACCTTCCTTCAAGCACAGGACCCTCTTCCCCAAACCACTTTTTTCTCCTTCATTTGCTTCCCCCAGATTGAACTTCACTTGCAAGAAGCATTTTTTGCATGGGAATAGCAGGAGCACGGTGGATTTTAGGACCTGGTCTATTGCTGGATTTGATTATGGGAACTTTGAGGGTCCTCAATCTGTTCTTGAGGCTGCTGCAGTGTTGACAGCTATCATTGTTGTTCATGAGAGCGGTCACTTTCTTGCTGCTTCTCTCCAAGGAATCCATGTGAGTAAGTTTGCTGTTGGGTTTGGTCCAATTTTAGCTAAGTTCAATGCAAACAATGTAGAATATTCCATCAGAGCTTTTCCTCTTGGTGGCTTTGTGGGGTTCCCTGATAATGACCCAGAGAGTGATATTCCTGTTGATGATGAAAACTTGCTTAAGAATAGACCAATATTGGATAGGTTGATTGTGGTATCAGCAGGTGTTATTGCCAATGTAATTTTTGCATTTGTTATTATCTTTGTTCAAGTCCTTTCTGTTGGTTTGCCCGAGCAAGAGGTTTTCCCTGGAGTGATTGTGCCTGAAGTTAGACCCTTTTCAGCTGCTTCTAGAGATGGGTTGCTTGCTGGTGATGTGATCATTGAAGTCAATGGAAGTGAGTTTCCTAAGTCAGGTCCTAATTCTGTTTCTGAAGTTGTTGATGTCATCAAGAAGAACCCTAAGAAATATGTTTTGCTCAAGGTCAAGAGGGGGGGAGAGAACTTTGAAATTGGGGTCACCCCAGATGAGAATTTTGATGGAACTGGCAAAATTGGAGTTCAGCTAGCCCCAAATGTGAGGATAGCTAAGTCTGCTAGTAAGGTTTCAGGTCCTGTAGCCATTATTGCTGTTGGTGCTGAAGTTGCGCGATCAAACATCGATGGTCTCTTCCAATTTGCAGCCATTCTCAATATTAACCTTGCTGTTATCAACCTTCTTCCTTTACCAGCTTTAGATGGGGGTACATTGGCTTTAATTCTCATTGAGGCTGCAAGGGGTGGGAGAAAGCTACCTCTAGAAGTGGAGCAACGGATCATGTCCTCGGGAATTATGCTTGTTATTATTCTTGGGTTATTCCTTATCATTCGAGACACCCTAAACCTTGATATTATCAAAGATATGTTGTAA 1236 0.4272 MVVNLSPSPPSHSSSIIRLANSKSPISEPSFKHRTLFPKPLFSPSFASPRLNFTCKKHFLHGNSRSTVDFRTWSIAGFDYGNFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNANNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRLIVVSAGVIANVIFAFVIIFVQVLSVGLPEQEVFPGVIVPEVRPFSAASRDGLLAGDVIIEVNGSEFPKSGPNSVSEVVDVIKKNPKKYVLLKVKRGGENFEIGVTPDENFDGTGKIGVQLAPNVRIAKSASKVSGPVAIIAVGAEVARSNIDGLFQFAAILNINLAVINLLPLPALDGGTLALILIEAARGGRKLPLEVEQRIMSSGIMLVIILGLFLIIRDTLNLDIIKDML* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1163 411 Pfam Peptidase family M50 93 392 IPR008915 GO:0004222|GO:0006508
Apr3g1163 411 ProSiteProfiles PDZ domain profile. 213 274 IPR001478 GO:0005515
Apr3g1163 411 CDD PDZ_metalloprotease 201 284 - -
Apr3g1163 411 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 306 411 - -
Apr3g1163 411 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 50 306 - -
Apr3g1163 411 Gene3D - 205 299 IPR036034 GO:0005515
Apr3g1163 411 Pfam PDZ domain 216 273 IPR041489 -
Apr3g1163 411 CDD S2P-M50_PDZ_RseP-like 89 403 - -
Apr3g1163 411 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 50 306 IPR004387 GO:0004222|GO:0006508|GO:0016021
Apr3g1163 411 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 306 411 IPR004387 GO:0004222|GO:0006508|GO:0016021
Apr3g1163 411 SMART pdz_new 201 275 IPR001478 GO:0005515
Apr3g1163 411 SUPERFAMILY PDZ domain-like 209 285 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1163 - - aprc:113858165 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1163 3 26180420 26182009 Apr3g1163 3 26180420 26182009 ECH