Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1159 ATGAATAACGCCAACAAGATGCGCATGGCATTCACCGTTGCCACATTAGCTGCTGCTATCATCTCCATCTTCTTCACCTTGCGAAGGCGCAAGCAAAATAAGTCCGCATCGAGTTCGTGCTATTTATATTCTGAAACGAAACCTCAGTGCGCGTTTAAGCGAGTGTTAGCAGATAATTCCTATACTGCGTTCAAGCACCTGATTAACGACGAGAATGCTTCAAATTCGCATCCATTTGAGGCAGAGATTACAGCATTGTTAAGAAATCCCCATCCTGAAATTGAGCTTAGTACTGAGATTGTGGACTTGGAAATGAAGGTATCGTATGTTTGGGTTGATACAGAGATGCAATTGAAGGAACTGGTTAATGTATTAAGCGAAGAAAGGTTCTTTGCTGTTGACACCGAACAACATAGTTTACGATCTTTTCTAGGCTTTACAGCATTAGTTCAGATTTCTACAGGGGTGAAAGATTATTTGATTGACACAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCAGTTTTTTCCAATCCTACAATTTGTAAAGTATTCCATGGGGCTGACAATGATATACTCTGGCTACAGAGGGACTTCCACATATACATTGTTAATCTATTTGATACTTCGAAGCGTGAAGATTGGAGACAACGCCCTCTTTCAGCAGAAATGGTACATTATGCACGAACGGATGCACACTATCTGATGTATATTGCAAACTGTCTCATCAATGAACTCAAACAACTGGACAATGAAAACTCTTGCTCCGACGACGAATTCCATTTTGTCCTCGAGGCTAGTCGACGATCAAACATGATTTGTTTACAACTTTTCACAAAGGAAATTGAAGCTTTTCCTGGAGAATCTGCTGTATTATCATTATTTTCACGTCACATGAGTAGTAATGGCTTTCCCTCAGTTTCAAATGAAACTAAGGTTCAGAATGTTGTGAGACAACTGTGCGCATGGAGAGATCTGATGGCTCGTATTCATGACGAGAGCTTAAAATACGTACTGTCAGACCACGCAATTGTTGCTTTGGCAAGTCAGCCTACAACGAGTCACTCTGAAATATACAACACCATAGCTCAGACTGATATCAATGTGGAGACGGGTGTTAACTCTTTCATCCCTTCCCCGTCTCCTGTTGTTTGCAGTCACCTGAGCGATATCTATCATCTGCTTGCAAATGAGTTGGCCAACAATGATAATATTTATTCGCTGATTCTTCAAAGGTGTTTAGGTCAAAATGGGAGTTGCCCACTTTCTGTATTTAATTATGCTTTGTTGGTTAACAGTAACCTAAGACCTACTTTAGCCTATAAGCACCTGGGCCCTAAAAATCCTAAACAATATTCGCGGAAGTCTTCTCGAGATTTGTTTGTTCAAAAATTCTCTTGTAAGTCTCCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGACTACTCTGTTATTGTGATCGGAAGAAGCTTGAATGGTACCTTACTCGGGATCTTGCAAAACTTATTGATGAGGACCCCCCAGCTATAATGCTCCTATTTGAACCCAAAGGCCGGCCAGAGGATGAAGGCAATGATTTTTATATCCAGAGTAAGAGAAATATATGTGTTGGGTGTGGCCAAGGAAATCACTATTTACGGTATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGCTCTCATGATATTGTCCTCCTTTGTGTGGATTGCCATGAAGTTGCCCATGCTGCTGCAGAAAAGTATAAGAGAAAAATAGCTGTTGAATTTGGGATTCCACTCTACGTTCGTAGTGTAATTCATCCAGGGCAAGAGACTGAAAAACAGATAGAAGAGGGAGGTGTATCTCCATTACAGTTACGGACAGCTGCAATGGCTCTTCTACGCCATGGACCAAGAATGCCTCTCAATCGCCGTGCAGAACTAGCTGAGATTGTAAAGAAATATTATGGAGGAAGGGAGATATCTGAGGAAGATCTAGAAAGAGCTTTACAAGTTGGCATGACGCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAGACATTCTGCGGCGAGTACTGCTACTGTGCGAGAACAGGATAATCATGCTAGTTGTGCACCCAGGCTGTGTGATGTGGACGTATTGAAAGTTGATGCTCATGACGGCTCATATGCAAATGAAGAAACAAGAAGTGAAGTACATAAAGAAGTTTCCACGAGAAAAGACGATTTTGGAAACCCCACTTTAGCCTCTGGTATTGCAATTAATGGAGCTGTCTCTGCAGCTCTGAATGGAAATACGATCCCAGTTGAAACTACACTTTATAACGAAACCAGTGACTCTGCTGTAAATGTTGATAATAGCCATCTGAGCAGAAGGCAAGAGAACGGAGAAAGTGACTTGTCTTATCTCCCCAAAGATGAAAAATCGACAAAAGCTCAACATAATTCAAAACTATCACTCTTGGGACATGGACCACATGGTAAGCAAGTTGTAGAACATATAGTGAAGGTGTATGGTGAAGATGGCATTCGAGAGTTTTGTCAAAGATGGAGACAAGTATTTGTGGACGCTGTAAATCCACGTTTTCTTCCTGCTGGTTGGGACGTAAAACACAGTGGACGAAGGGACTTTGGGGTGTTCAGCGTATACAATCCTGACAAAATAGCAGCTGCTGCTAGTAGAGAGTAA 2715 0.4151 MNNANKMRMAFTVATLAAAIISIFFTLRRRKQNKSASSSCYLYSETKPQCAFKRVLADNSYTAFKHLINDENASNSHPFEAEITALLRNPHPEIELSTEIVDLEMKVSYVWVDTEMQLKELVNVLSEERFFAVDTEQHSLRSFLGFTALVQISTGVKDYLIDTIALHDFMGILRPVFSNPTICKVFHGADNDILWLQRDFHIYIVNLFDTSKREDWRQRPLSAEMVHYARTDAHYLMYIANCLINELKQLDNENSCSDDEFHFVLEASRRSNMICLQLFTKEIEAFPGESAVLSLFSRHMSSNGFPSVSNETKVQNVVRQLCAWRDLMARIHDESLKYVLSDHAIVALASQPTTSHSEIYNTIAQTDINVETGVNSFIPSPSPVVCSHLSDIYHLLANELANNDNIYSLILQRCLGQNGSCPLSVFNYALLVNSNLRPTLAYKHLGPKNPKQYSRKSSRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYLTRDLAKLIDEDPPAIMLLFEPKGRPEDEGNDFYIQSKRNICVGCGQGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAVEFGIPLYVRSVIHPGQETEKQIEEGGVSPLQLRTAAMALLRHGPRMPLNRRAELAEIVKKYYGGREISEEDLERALQVGMTPHERRRFEKKRGFSFRHSAASTATVREQDNHASCAPRLCDVDVLKVDAHDGSYANEETRSEVHKEVSTRKDDFGNPTLASGIAINGAVSAALNGNTIPVETTLYNETSDSAVNVDNSHLSRRQENGESDLSYLPKDEKSTKAQHNSKLSLLGHGPHGKQVVEHIVKVYGEDGIREFCQRWRQVFVDAVNPRFLPAGWDVKHSGRRDFGVFSVYNPDKIAAAASRE* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1159 904 MobiDBLite consensus disorder prediction 793 822 - -
Apr3g1159 904 SMART 35exoneu6 109 248 IPR002562 GO:0003676|GO:0006139|GO:0008408
Apr3g1159 904 Gene3D - 46 211 IPR036397 GO:0003676
Apr3g1159 904 MobiDBLite consensus disorder prediction 799 822 - -
Apr3g1159 904 Pfam HRDC domain 315 355 IPR002121 GO:0003676
Apr3g1159 904 PANTHER PROTEIN RRP6-LIKE 3 212 896 - -
Apr3g1159 904 PANTHER PROTEIN RRP6-LIKE 3 2 212 - -
Apr3g1159 904 Pfam 3'-5' exonuclease 109 211 IPR002562 GO:0003676|GO:0006139|GO:0008408
Apr3g1159 904 Gene3D HRDC domain 298 406 IPR044876 -
Apr3g1159 904 Gene3D - 212 285 IPR036397 GO:0003676
Apr3g1159 904 SUPERFAMILY Ribonuclease H-like 47 254 IPR012337 -
Apr3g1159 904 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 212 IPR045092 GO:0000175|GO:0000467
Apr3g1159 904 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 212 896 IPR045092 GO:0000175|GO:0000467
Apr3g1159 904 SUPERFAMILY HRDC-like 314 401 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1159 Apr-Chr3 26140544 26147612 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1159 K12951 - gmx:100791485 1487.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1159 3 26140544 26147612 Apr3g1159 3 26140544 26147612 ECH