Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1126 ATGAAAGAGACCGTGAGTGTCGCTCTAAAACTCAAGACAACAACCCTTCTTTCCAAACCTTCTTACCCCACCACTCTTCTACTTCCATTTCCTCTCTCTTCCCTACAATGTGGAACCTTGCTGCAATCACTCGCCAACTCAAAATCCTTCACACAAACACAACAACTCCATGCCCACGTCACCACCTGCGGCACACTCCTCCACAACACCTACCTTGCCACCAAGCTCTCTGCTTGCTACGCTTCTTGCGGCCACATGCCTCAGGCCCAACTCATCTTCGACCAAATAATCTTAAAGAGTTCATTTTTATGGAATTTCATGATCAGGGGCTATGCTTGTAATGGGTGTCCTTCAGAGTCCCTTTTTTTGTACCGTGAAATGTTCAGTTTTGGACAAAAGCCTGATAATTTCACCTACCCTTTTGTTCTAAAGGCTTGTGGTGACCTTTTGGTTCGGGAAATTGGTAGAAAGGTTCATGCTTTGGTGCTGGTTGGTGGGTTGGGGTTGGATATTTATGTGAGTAATTCAATGCTTTCGATGTATTCCAAGTTTGGTGACATGGCAACTGCGAAGTTGCTGTTTGATAAAATGCCTGTGAGGGATTTAACTTCTTGGAACACTGTAATTTCGGGGCATGTGAAGAATGGTGAGGCAAGGGATGCTTTTGCAGTTTTTGGTCGCATGAGAAGGGCTGGTGTTGTTGGAGATGGGACCACCTTGCTTGCCCTTCTCTGTGCTTGTGGTGATCTTATGGATTTAAGGATGGGAAAAGTGGTTCATGGATATGTTGTTAGGAATAGTGGTAAAGTGTGTAATGAGTTTCTGATGAATTCTCTGATTGACATGTACTGCAAATGTGATACCTTGTCTGGTGCGAAGACGTTATTTCAAAATTTGAAAGTGAAGGATACCGTGTCCTGGAATTCTTTGATTTCTGGCTATGCAAAGCGTGGGGATGCTTTTAAAGTTCTTGAACTTTTTAGTCAAATGATTATAGGAGGTGCAATTCCTGATGAAGTGAGTGTGATTTCTATGCTTGGAGCTTGTAATCAAATCTCAGCCTTGCTATTGGGTTCATCTGTTCACTCATATGTTGTTAAAAAGGGTTATGGAGTGAATACTGCTGTGGGAACTGCCCTTATTAGCATGTATGCAAACTGTGGAAGTTTATTTTCTGCCCGTTGTGCTTTTTACGAGATGCCCGAAAAACAATTGGCTTCATGGACAGTAATGGTTACAGGATTTGGAATTCATGGGAGGGGAAGAGAGGCCATCACCATATTTTATGAAATGCTAGATAAAAATATTGCTCCAGATGAGGGCATTTTCACTTCAGTTTTATCGGCTTGTAGTCATTCTGGATTAGTGGATGAGGGTAAACAAATTTTCTATAGTATGACCAGAGACTATAATGTGGAGCCTGGACCCACTCATTATTCATGTTTAGTGGATCTACTTGGCAGAGCAGGGTACATAGATGAGGCATATGCAGTTATAGAAAATATGAAATGGAAACCTAATGAAGATGTATGGACTGCTCTTCTTTCTGCTTGCAGATTACATAGGAATGTCAAGTTAGCAGAGATCTCAGCTCAGAAGCTTTTTGAAATGAATCCTAATGGAGTGAGTGGCTATGTTTGCCTTTCCAACATCTATGCTGCTGAGAGACAGTGGAAGGACGTTGAAAAGGTTAGGGAATTGGTGAAAAAAAAGAGATTGAGGAAACCACCTAGTTTCAGCTTTGTCGAGTTAAATAAGTCTGTTCATCAATTTTTTGTTGGAGATACAACCCATCAACAGTCCGACAATATTTATGCAAAATTGAAAGATTTGAATGAGCAGCTCAAGAAAGCTGGGTACAAGCCCGACACTAGTTCAGTTCTCTATGATGTTGAGGAAGAAATAAAGGAGAGGATGCTGTGGGATCATAGCGAGAGATTGGCACTTGCTTTTGCACTTATTAATACTTGTCCAGGAACCACAATCAGAATAACCAAGAATCTTCGTGTGTGTGGCGATTGCCACACAGTAATAAAAATGATTTCTAAGATCACGAGTCGGGAGATTATCATGCGAGATATTTATAGGTTTCATCATTTTAGAGATGGCTTATGCTCATGTGGTGGATATTGGTGA 2136 0.4143 MKETVSVALKLKTTTLLSKPSYPTTLLLPFPLSSLQCGTLLQSLANSKSFTQTQQLHAHVTTCGTLLHNTYLATKLSACYASCGHMPQAQLIFDQIILKSSFLWNFMIRGYACNGCPSESLFLYREMFSFGQKPDNFTYPFVLKACGDLLVREIGRKVHALVLVGGLGLDIYVSNSMLSMYSKFGDMATAKLLFDKMPVRDLTSWNTVISGHVKNGEARDAFAVFGRMRRAGVVGDGTTLLALLCACGDLMDLRMGKVVHGYVVRNSGKVCNEFLMNSLIDMYCKCDTLSGAKTLFQNLKVKDTVSWNSLISGYAKRGDAFKVLELFSQMIIGGAIPDEVSVISMLGACNQISALLLGSSVHSYVVKKGYGVNTAVGTALISMYANCGSLFSARCAFYEMPEKQLASWTVMVTGFGIHGRGREAITIFYEMLDKNIAPDEGIFTSVLSACSHSGLVDEGKQIFYSMTRDYNVEPGPTHYSCLVDLLGRAGYIDEAYAVIENMKWKPNEDVWTALLSACRLHRNVKLAEISAQKLFEMNPNGVSGYVCLSNIYAAERQWKDVEKVRELVKKKRLRKPPSFSFVELNKSVHQFFVGDTTHQQSDNIYAKLKDLNEQLKKAGYKPDTSSVLYDVEEEIKERMLWDHSERLALAFALINTCPGTTIRITKNLRVCGDCHTVIKMISKITSREIIMRDIYRFHHFRDGLCSCGGYW* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1126 711 Pfam PPR repeat 103 131 IPR002885 -
Apr3g1126 711 Pfam PPR repeat 204 233 IPR002885 -
Apr3g1126 711 Pfam PPR repeat 407 436 IPR002885 -
Apr3g1126 711 Pfam PPR repeat 378 403 IPR002885 -
Apr3g1126 711 Pfam PPR repeat 175 200 IPR002885 -
Apr3g1126 711 Pfam PPR repeat 478 504 IPR002885 -
Apr3g1126 711 Pfam PPR repeat 443 468 IPR002885 -
Apr3g1126 711 Pfam PPR repeat 276 301 IPR002885 -
Apr3g1126 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 474 IPR002885 -
Apr3g1126 711 Pfam E+ motif 588 611 IPR046849 -
Apr3g1126 711 Pfam DYW family of nucleic acid deaminases 619 711 IPR032867 GO:0008270
Apr3g1126 711 Pfam PPR repeat family 302 349 IPR002885 -
Apr3g1126 711 Gene3D Tetratricopeptide repeat domain 354 448 IPR011990 GO:0005515
Apr3g1126 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Apr3g1126 711 PANTHER - 116 685 - -
Apr3g1126 711 PANTHER - 53 115 - -
Apr3g1126 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Apr3g1126 711 Gene3D Tetratricopeptide repeat domain 30 152 IPR011990 GO:0005515
Apr3g1126 711 Gene3D Tetratricopeptide repeat domain 153 255 IPR011990 GO:0005515
Apr3g1126 711 Gene3D Tetratricopeptide repeat domain 256 353 IPR011990 GO:0005515
Apr3g1126 711 Gene3D Tetratricopeptide repeat domain 449 608 IPR011990 GO:0005515
Apr3g1126 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Apr3g1126 711 TIGRFAM PPR: pentatricopeptide repeat domain 407 440 IPR002885 -
Apr3g1126 711 TIGRFAM PPR: pentatricopeptide repeat domain 443 474 IPR002885 -
Apr3g1126 711 TIGRFAM PPR: pentatricopeptide repeat domain 103 135 IPR002885 -
Apr3g1126 711 TIGRFAM PPR: pentatricopeptide repeat domain 305 338 IPR002885 -
Apr3g1126 711 TIGRFAM PPR: pentatricopeptide repeat domain 204 236 IPR002885 -
Apr3g1126 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Apr3g1126 711 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 53 115 - -
Apr3g1126 711 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 116 685 - -
Apr3g1126 711 Pfam E motif 521 583 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1126 Apr-Chr3 25819406 25824589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1126 88 711 Glycoside Hydrolase AT3G49170 36.635 3.20e-139 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1126 - - gmx:100817006 1095.88