Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1125 ATGCTCCCACTTGGAGTGATTTCTGCTGAGAATGTCTTTGAAGACCCAGATGGGCTCAAAGAAGGACTCTTGAAGCTACGAGGAGCAGGTGTTGATGGGGTTATGGTTGATGTGTGGTGGGGTATCATAGAACTGAAGGGGCCTAAGCAATATGACTGGAGTGCCTATAGGCGCTTGTTTCAACTGGTTCAGGAATGTGGCTTGAAACTGCAAGCCATCATGTCATTCCATCAATGTGGAGGGAACGTAGGAGATGTTGTTAACATCCCAATTCCTCCTTGGGTACTTAACATTGGAGAATCAGATCCTGATATCTTCTACACCAACCGATCGGGTACCAGGAACATAGAATATCTAACCCTTGGTGTAGACAAGCAGCCTATTTTCCATGGAAGAACAGCCATTGAGATATACAGTGACTACATGAAGAGTTTCCGAGAAAACATGTCAGATTTTCTTGCATCTGGGCTTATTGTAGATGTTGAAGTTGGACTTGGCCCAGCAGGAGAGCTCAGGTACCCCTCTTATCCAGAAAGTCAAGGATGGAAATTTCCTGGTATTGGAGAATTTCAGTGCTATGACAAATATTTGAAGGCAGATTTTAAAGCAGCTGCAGCAACGGCTGGCCATCCTGAATGGGATCTGCCAGATGATGCAGGGAAGTATAACGACGTACCAGAATCTACTGGGTTCTTCAAATCAAATGGCACATATGTCACTGAGAAAGGGAAGTTCTTCTTAACTTGGTATTCTACCAAATTGCTGAATCATGGAGATGAAATTCTAGAACAAGCCAACAAAGCTTTCCTGGGCTGTAAAGTCAACTTAGCGATCAAAGTATCTGGAATCCACTGGTGGTACAAAGTTGAAAATCATGCTGCTGAGCTTACTGCTGGATATTACAATCTTCATGATAGAGATGGATACCGTCCCATTGCAAGAATGCTGTCTCGTCATCATGCCATCCTTAACTTTACATGTCTTGAGATGAAGGACTCAGAACAAAGCGCTGATGCCAAAAGTGGACCACAGGAACTTGTCCAGCAGGTCTTTAGTGGAGGTTGGAAAGAAAATATCCAAGTTGCTGGAGAAAATGCACTTCCAAGGTATGATGCCACTGCTTACAACCAGATCATACTGAATGCAAGGCCACAAGGTGTCAACAAAAATGGCCCTCCAAAACTAAAGATGATCGGATTCACGTACCTTCGTCTTTCAGATGACCTACTACAACAATCAAATTTTGCTATATTCAAAAAATTTGTGCTGAAGCTTCATGCAGATCAGGATTACTGTGCAGACCCTCAAAAGTACAATCAGGCCATAACACCATTGAAGCCACCAGAACCAAAGATTCCCATTGAGGTTCTTCTTGAAGCAACTAAACCAACAGCCCCGTTCCCCTGGCTTTCAGAGACAGACATGAAAGTTGATGGTTGA 1440 0.4354 MLPLGVISAENVFEDPDGLKEGLLKLRGAGVDGVMVDVWWGIIELKGPKQYDWSAYRRLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPPWVLNIGESDPDIFYTNRSGTRNIEYLTLGVDKQPIFHGRTAIEIYSDYMKSFRENMSDFLASGLIVDVEVGLGPAGELRYPSYPESQGWKFPGIGEFQCYDKYLKADFKAAAATAGHPEWDLPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSTKLLNHGDEILEQANKAFLGCKVNLAIKVSGIHWWYKVENHAAELTAGYYNLHDRDGYRPIARMLSRHHAILNFTCLEMKDSEQSADAKSGPQELVQQVFSGGWKENIQVAGENALPRYDATAYNQIILNARPQGVNKNGPPKLKMIGFTYLRLSDDLLQQSNFAIFKKFVLKLHADQDYCADPQKYNQAITPLKPPEPKIPIEVLLEATKPTAPFPWLSETDMKVDG* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1125 479 ProSitePatterns Beta-amylase active site 1. 77 85 IPR018238 GO:0000272|GO:0016161
Apr3g1125 479 ProSitePatterns Beta-amylase active site 2. 166 176 IPR018238 GO:0000272|GO:0016161
Apr3g1125 479 Gene3D Glycosidases 1 479 - -
Apr3g1125 479 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 30 44 IPR001554 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 51 69 IPR001554 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 73 94 IPR001554 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 166 188 IPR001554 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 238 257 IPR001554 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 274 290 IPR001554 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 291 302 IPR001554 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 309 332 IPR001554 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 346 368 IPR001554 GO:0000272|GO:0016161
Apr3g1125 479 SUPERFAMILY (Trans)glycosidases 1 475 IPR017853 -
Apr3g1125 479 PANTHER BETA-AMYLASE 6 1 474 - -
Apr3g1125 479 PANTHER - 1 474 IPR001554 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Plant beta-amylase signature 156 165 IPR001371 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Plant beta-amylase signature 312 322 IPR001371 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Plant beta-amylase signature 354 363 IPR001371 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Plant beta-amylase signature 368 377 IPR001371 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Plant beta-amylase signature 383 399 IPR001371 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Plant beta-amylase signature 401 415 IPR001371 GO:0000272|GO:0016161
Apr3g1125 479 PRINTS Plant beta-amylase signature 416 430 IPR001371 GO:0000272|GO:0016161
Apr3g1125 479 Pfam Glycosyl hydrolase family 14 1 421 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1125 Apr-Chr3 25818511 25820847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1125 1 477 Glycoside Hydrolase AT2G32290 66.736 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1125 K01177 - gmx:547931 874.004