Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1123 ATGGAAACAAGATCTGCAAAACGCAAGAAGATTGCCCAAATAGTAGAGAATGAAGCTAAAGCAGCCACGGATCGGATCAGTGATCTCCCTGATGATATTCTTCATCATATCCTTTTCTTACTTCCCATAAAATGTGTTGCACGAATGAGCATTCTTTCTAAGAGATGGAAATTTCTGTGGACCACTTTTCCTGACCTTGACTTCACAACTCTTAACCCATTTGAAACTTCTTCCAAAAATGTTAAATTTTCCAACTTTGAAAAACCAAGACACCCTTTGGATTCTACACGAATGGATTTCATTACCCAAGTTCTCTCTATCCGCGAAAAGCAATCAGACATTAGGGTTCTTTGTTTTCGTGCACGTTTGAGTTTTTCACGGTTAAATAGTTTGATGCGTAGTGCCATTAGGCATAATGTTAGAGAACTTGATATTGAAGTGGCCACAGAAGACGTGTTCACGGATGATTATTTCAACTTTCCCAGATGTGTTATTGGAAGTGAATCTTTAAGGGTTTTGAAATTGAAATCAGGTTTTCGTTTGCCTCCATCTTCAGTTATGAGAAGTGGGTTCCAATCTTTACAAACATTGTCTCTTTCCCTAGTCATTTTGACCAAACAACCTTCTCTCCCTGATTTGTTCTCTGAATCATCCTTTCCTCTTTTGAGAATTTTGCACCTTGATATGTGCTATGGGTTGAAATATCTTCATGTTGGATGTCGAGCTCTTGAAGATTTGAGCTTAGAAAAATGTTATCAGTTAGAAGTTTTGGATATCTCATGTGTTAAACTTGAAAGAATGAGATTAGTAAAGTGTTTTGATGCCTATAGTGACAAGAGTTGGGTAAGAATCAATGCACCCAAGCTTCAACATTTGTTTTGGCAACATAATGCCGTCACTGACAAGACTGTTTTTGAGCATTCAAATTTCTTGCATGAGGTCTCCGTTGGTTTCTTTATACTGGATAGAGATAGAAATACGGGTAAGCTTCAAAGTGCCACTAATTTTTTGTCTGGATTGTCTCATGTTCGTTCCTTGACTCTTGAAAGGCAAACTATTGAGATTCTATCAAATAATCACCTCCTTTTTCAGCCATTCTATAATCTTAAATCATTAGAGCTGCATACTGGATTCAACAAAAGTAATGTTCCGGGATTGGCATGCCTATTCAAGAACTCCCCCACTCTCAACAGTCTGATTCTCAAGATCCTTAACGAATTTAGGATTGAAAGAAAAGAATGGAATAGGGACTTATGGGACATGACTATCACCGAGGGAGAGCTGTATTGGGAATCTCAGAGTCGAACTCTGGAATCTTTTCTACAACACTTGAAAGTGGTGAAAATTCATGGGTTTCTTGATTATGAAAATGAAGTTGCACTAGCAAAGTTTCTCCTCAAGTATGGGAAGGCCTTAGAAGAAATGATATTATATGCTGGACATTGCAATGCAAGAGATACCCTAAGGCGACAAAAAATAAGGTCGCAAATGATGGGATTTTCTTGGGCTTCTTCTAATGCAAAAGTGGCATTTCAATAG 1539 0.3788 METRSAKRKKIAQIVENEAKAATDRISDLPDDILHHILFLLPIKCVARMSILSKRWKFLWTTFPDLDFTTLNPFETSSKNVKFSNFEKPRHPLDSTRMDFITQVLSIREKQSDIRVLCFRARLSFSRLNSLMRSAIRHNVRELDIEVATEDVFTDDYFNFPRCVIGSESLRVLKLKSGFRLPPSSVMRSGFQSLQTLSLSLVILTKQPSLPDLFSESSFPLLRILHLDMCYGLKYLHVGCRALEDLSLEKCYQLEVLDISCVKLERMRLVKCFDAYSDKSWVRINAPKLQHLFWQHNAVTDKTVFEHSNFLHEVSVGFFILDRDRNTGKLQSATNFLSGLSHVRSLTLERQTIEILSNNHLLFQPFYNLKSLELHTGFNKSNVPGLACLFKNSPTLNSLILKILNEFRIERKEWNRDLWDMTITEGELYWESQSRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKYGKALEEMILYAGHCNARDTLRRQKIRSQMMGFSWASSNAKVAFQ* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1123 512 Pfam F-box domain 26 61 IPR001810 GO:0005515
Apr3g1123 512 SUPERFAMILY RNI-like 161 402 - -
Apr3g1123 512 Gene3D Ribonuclease Inhibitor 166 487 IPR032675 -
Apr3g1123 512 SUPERFAMILY F-box domain 23 66 IPR036047 GO:0005515
Apr3g1123 512 SMART 9598neu4hmm 438 512 IPR006566 -
Apr3g1123 512 Pfam FBD 436 477 IPR006566 -
Apr3g1123 512 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 20 457 - -
Apr3g1123 512 Gene3D - 6 63 - -
Apr3g1123 512 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Apr3g1123 512 PANTHER F-BOX PROTEIN-LIKE 20 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1123 Apr-Chr3 25798245 25800432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1123 8 481 EF-hand Containing Proteins AT5G41840 23.077 4.16e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1123 - - gmx:100819136 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1123 3 25798245 25800432 Apr3g1123 3 25798245 25800432 ECH