Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1121 ATGGCTGGAATTGGCTTTGAAGACTTGTTGCCTGTGATGGCCAACAAACTTGGTGGGGAGGGTCTAATTAAGGAGCTCTGTAATGGGTTTCAATTGCTGATGGATAAGGATAAAGGAGTGATCACGTTGGAAAGCTTAAGAAAAAACGCTGCTCTCTTGGGTCTTGAGGACTTGAAGGAGGATGAACTTGTGAGCATGATGAGGGAAGGAGATGTTGATGGAGATGGAGCACTTACCCAGATGGAATTCTGCGTTTTGATGTTCAGGTTGAGCCCAGAGTTGATGGAGGAGTCTTGGTTTTGGCTTGAAGAGGCACTCCAACATGAACAGCCCAACAACACCAACAACAACAACAATTCCATGTAG 366 0.4563 MAGIGFEDLLPVMANKLGGEGLIKELCNGFQLLMDKDKGVITLESLRKNAALLGLEDLKEDELVSMMREGDVDGDGALTQMEFCVLMFRLSPELMEESWFWLEEALQHEQPNNTNNNNNSM* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1121 121 SUPERFAMILY EF-hand 4 87 IPR011992 -
Apr3g1121 121 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Apr3g1121 121 SMART efh_1 62 90 IPR002048 GO:0005509
Apr3g1121 121 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Apr3g1121 121 Gene3D - 4 119 - -
Apr3g1121 121 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 3 114 - -
Apr3g1121 121 PANTHER CALCIUM-BINDING PROTEIN KIC 3 114 IPR044205 GO:0005509
Apr3g1121 121 Pfam EF-hand domain pair 38 89 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1121 Apr-Chr3 25776554 25777231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1121 6 109 EF-hand Containing Proteins AT5G54490 65.714 2.37e-44 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1121 K24345 - gmx:100527206 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1121 3 25776554 25777231 Apr3g1121 3 25776554 25777231 ECH