Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1117 ATGTTTAGGTTTTCTTGTTTCCATGCTAATGTCCAAGGCAACAAGGCAAAGAAAACAGTTCAACCATCGGCCGAAGCAATGGTGAAGTCTTTGCAAGATGGTACCCAAAATCAAGGCTGTAAAGATTCATCTAATCCTACAAGTTCATATTCGTCCCCTTCCAGAGAGCAACACCAGCAAATGAATGTCATTGAGAATCATATTAGCAATTGGGATTCAGTTAAGCGTAGTTGTAGGTCAGAGGATCTGAATAACGAGTCTTCCTTTGAATATGACAGCAAGGTTCACCAAACCAGGTGTCTTAAGAAAAGCCAATCTCTTCAAAGTGGGCTTGACCAAGGTGTAAACGAGGGTGATGAAGATCTGGGGTTGTCTTGTGATGGTTCCAAAAGCCACAATGAGTCATCAATTTCAATTTGCAGAAAGAATCACGATGCCAACCCCATGTATCAGTATGGAAAGAATTCAATTCAAGTCAGTTCAGGTTTTGCAAATGATGGCTCACTTTTTTCAATAGGAAATCCAACGCCTTCAGATAAAGATGCTCCTGAAATTTCTGATACTCCATTATCTGGTGAATTAGCTGGTGACATTGCTGACCAGACTCCTGTTCCTGGTACCCTATCTCTAATAAAGTCACGTTCTTTACCCAATATCGGAGCTTCTATGCTTTCTGCTGGAAAAGATGCTTTTAAACGTGCATCTTCATTGTCAAGGTCTTCTGATGATCTTCCTGCTCTACGCATGAGGCAGAAAGATGTACTCTCTAACGAGTATGATGATCAAATAAGGGGAGATGAAGAAAGAGAGAATGATGTGGGAAAAACTGGAGATGGTCACATGGAGAGTTTCTTTGATGATGGTTTTGATTCTTATCTACTTTCTGGTTCAGCAAAAGATTGGGTAATGCCGATTACAGATGATATAAATGATGTCAAACTTCAAGGAGATTCCTCAGTTGACTGCTTGGGTGAATTTACTAACAAGGATTTTAAGATTAAGCGCATTGAGAATTGGGTAATAGGTCTGCAGCATTGTGGACCACCACTAGAGGAAACAAATGAATTGCCTGATTCTATTGAACCTTTAGTTGATTTTTACACGACAAACAGTGTGACTGGTGCCGCTGTGGATCATAAGGTGTCTCCAGGAATGGAAGCAGCTAAAAGATATATATCTTCTCTGGGTGCTAATGCCACCGCGGCTCAGCTAGCAAACCATGGGCTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTAAAAGTGCTTAATTTGGCTGGAAATGCTATCGTGAGGATAACTGCTGGTACTCTTCCTCGAGGACTTCACATGTTGAATTTGTCCAGAAACAAGATATCCACTATAGAAGGATTACGTGAACTTACACGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGCCTTGCATCATGCTCATCTCTGAAGGAGCTGTACCTGGCTGGCAACAAGATCAGCGAAGTAGAGGGTCTGCACCGGCTCTTGAAACTAAGTATCCTGGATCTGCGTTTCAACAAACTTTCAACTGCCAAATGTCTTGGCCAACTTGCAGCCAACTATAATTCCTTGCAAGCTATCAACTTGGAAGGTAATCCAGCCCAGAAAAATGTTGGAGATGACCAAATGAAGAAATATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAATCGGCAGTCCATCAAGGCGAGCACTTCGAAGGACGGAGCAGAGCGTTCATTTCGTTTTGGAATGAATTCCCATCTGGTTGATCGCAGCCTCAGGGCGGATCGCAAGACCACAAGGAAGGGTAGCCATGGTGTTGCAGCCACACGGAGGCCATCAAACACTTCTGCTTATGCTCGAAAAAGTGTGGACTCGCAGAAACTGTCCAGAGGCAAGCAAGGCCTCCTGCCACCAACTAGAACCAAAGTATCATCCCAAAGTCGCCCTCATTTTGATGCTCCCACCAAAGCATTGAACTTGACATCAGAGCGCTCCATGCGTAAGAGTCGCAGTGAGGGAACTCTTGGAGTTCTGTGA 2061 0.4352 MFRFSCFHANVQGNKAKKTVQPSAEAMVKSLQDGTQNQGCKDSSNPTSSYSSPSREQHQQMNVIENHISNWDSVKRSCRSEDLNNESSFEYDSKVHQTRCLKKSQSLQSGLDQGVNEGDEDLGLSCDGSKSHNESSISICRKNHDANPMYQYGKNSIQVSSGFANDGSLFSIGNPTPSDKDAPEISDTPLSGELAGDIADQTPVPGTLSLIKSRSLPNIGASMLSAGKDAFKRASSLSRSSDDLPALRMRQKDVLSNEYDDQIRGDEERENDVGKTGDGHMESFFDDGFDSYLLSGSAKDWVMPITDDINDVKLQGDSSVDCLGEFTNKDFKIKRIENWVIGLQHCGPPLEETNELPDSIEPLVDFYTTNSVTGAAVDHKVSPGMEAAKRYISSLGANATAAQLANHGLVVIPFLSAFVSLKVLNLAGNAIVRITAGTLPRGLHMLNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKLSTAKCLGQLAANYNSLQAINLEGNPAQKNVGDDQMKKYLQGLLPHLVYYNRQSIKASTSKDGAERSFRFGMNSHLVDRSLRADRKTTRKGSHGVAATRRPSNTSAYARKSVDSQKLSRGKQGLLPPTRTKVSSQSRPHFDAPTKALNLTSERSMRKSRSEGTLGVL* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1117 686 PANTHER NISCHARIN RELATED 101 684 - -
Apr3g1117 686 MobiDBLite consensus disorder prediction 26 58 - -
Apr3g1117 686 SUPERFAMILY Outer arm dynein light chain 1 411 572 - -
Apr3g1117 686 Pfam Leucine rich repeat 420 475 IPR001611 GO:0005515
Apr3g1117 686 Gene3D Ribonuclease Inhibitor 370 557 IPR032675 -
Apr3g1117 686 ProSiteProfiles Leucine-rich repeat profile. 464 486 IPR001611 GO:0005515
Apr3g1117 686 SMART LRR_typ_2 418 441 IPR003591 -
Apr3g1117 686 SMART LRR_typ_2 507 529 IPR003591 -
Apr3g1117 686 SMART LRR_typ_2 462 485 IPR003591 -
Apr3g1117 686 MobiDBLite consensus disorder prediction 598 686 - -
Apr3g1117 686 PANTHER BNAA09G01440D PROTEIN 101 684 - -
Apr3g1117 686 ProSiteProfiles Leucine-rich repeat profile. 442 463 IPR001611 GO:0005515
Apr3g1117 686 MobiDBLite consensus disorder prediction 646 670 - -
Apr3g1117 686 MobiDBLite consensus disorder prediction 173 201 - -
Apr3g1117 686 SMART LRR_sd22_2 440 461 - -
Apr3g1117 686 SMART LRR_sd22_2 485 506 - -
Apr3g1117 686 SMART LRR_sd22_2 462 484 - -
Apr3g1117 686 SMART LRR_sd22_2 507 531 - -
Apr3g1117 686 MobiDBLite consensus disorder prediction 248 279 - -
Apr3g1117 686 MobiDBLite consensus disorder prediction 616 631 - -
Apr3g1117 686 ProSiteProfiles Leucine-rich repeat profile. 487 508 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1117 Apr-Chr3 25745675 25749690 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1117 - - gmx:100790061 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1117 3 25745675 25749690 Apr3g1117 3 25745675 25749690 ECH