Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1084 ATGGCTCTCCAACACGAAAACGGGTCGGATCTCGACCCGAATCCTATTGGGGTGGAGACCCATGCAGCGGAGGGTGAAAAGTTGGGAACTTTGGGTGGTGCTGTTCCTATTGAGGAAGGCGTGGAGAAGATATCTTTAGTGGGTGCCTCTCTTTCAATTCAGGGGAATGGTGAAAACAATGATAGTGAAAGCCAAAACGAAACCGAAAGTGATAGTGAAAATGAAAATGCAGAGTCTGACTGTCCTTCTGCTTCTGATTCTAGCAGCGGTAGCAGCAGCAGCAGCAGCAGCAGTGATAGTGAGGATGAGGAGGAGGCACGCCATGATGGTGATGCGGAAGTTGAAGAAGGTGAGATAAGTGGTTCTGATAAAGAGAAGATGGTTAGTTGGAGCATGGTTGATGATGATAATATTGAACATGATGATGAAGATGATGATGATGCAGGAGGACCCATCAGGTCAAAGAATGAGCTTCAGAATCTGCCTCCTGTTCCTTCAGTTGATGCAGCCTTAGAACCACAACACCAAATGCGGTCAGTGGGGATTGTTACGTCGATTATTGGTGCTCAAGTCATTGTGGAAGGAGTTGAGAAGCATGACCCTCTTAATGAGGGTTCCATTCTTTGGCTGACTGAAAGCCGAAAACCACTGGGTTTAGTTGATGAAATTTTTGGACCAGTCAAGAACCCTTTTTATGTTGTGAGATACAATTCTGAAAGTGAAGTCCCGGCAGGGATCCATGGGGGAACCTTGATCTCATTTGTTCCAGAATTTGCTGATCATGTGCTTAGTAACAAGGATCTATATAAGAAAGGGTATGATGCATCTGGTGCAAATGATGAAGAGTTGTCTGATGAAATAGAGTTTTCAGATGATGAGAAAGAGGCTGAATACAAGAGAATGCAAAGAACGACAAAGAGAGGTGCAAATGATCAAAACCATGGCAAGAAAAAAAACAATAGAAAGAAGTTTCCACCAAAAGAGCATGTGACGCCTACCATCTCTGATGCACCTGCAGTAACATTGCTTGATCATGGAAATTGTGCTCCTTTTTCCGGAATTGGACAAGGTTTTTTGGGGGGAACTACCACAGTTCCATCATTTCCACCCATAAACACAGCTCCTAACTTCGCCACAAATGGAGTTTGGACAAATGGAACAATACTTCCACAGCAGCCACAGCCTGCCCTGCTTCCTAATGGATTTCCTTCAAATGGCATATCATGGTACCCACAAAACACTCAAATTTCTGCTCAATTGCCTATGCCAGGAATTCCATTTCAACAGCAATTGCATTCAAGTCAGGGACCTCTCTCTACACCTATGCTGCCTGGGGTACAGCCTAATATATTTGCACAACCCATTTTTGCACCTGGGCTTGTGGGGCAAAACCAAATGACATTTGGATTGAACTCACCCTTTCCACCGATTCAGCCACCTATATGTGCTGCACAACAGGGTTTTCCACCCATTGAATTGCATTCAGAAAGAAACCTTAATTTGCATTCTAATGCTATATCTGGCGCTCCCTCTCAATTTCATCCAGGTTCATCTGTTAATCGTGGGAGAAAAACATTTCATGGTGCAGGTAGGAAAGGGTGGCGACCAGCCAAGTGA 1617 0.4447 MALQHENGSDLDPNPIGVETHAAEGEKLGTLGGAVPIEEGVEKISLVGASLSIQGNGENNDSESQNETESDSENENAESDCPSASDSSSGSSSSSSSSDSEDEEEARHDGDAEVEEGEISGSDKEKMVSWSMVDDDNIEHDDEDDDDAGGPIRSKNELQNLPPVPSVDAALEPQHQMRSVGIVTSIIGAQVIVEGVEKHDPLNEGSILWLTESRKPLGLVDEIFGPVKNPFYVVRYNSESEVPAGIHGGTLISFVPEFADHVLSNKDLYKKGYDASGANDEELSDEIEFSDDEKEAEYKRMQRTTKRGANDQNHGKKKNNRKKFPPKEHVTPTISDAPAVTLLDHGNCAPFSGIGQGFLGGTTTVPSFPPINTAPNFATNGVWTNGTILPQQPQPALLPNGFPSNGISWYPQNTQISAQLPMPGIPFQQQLHSSQGPLSTPMLPGVQPNIFAQPIFAPGLVGQNQMTFGLNSPFPPIQPPICAAQQGFPPIELHSERNLNLHSNAISGAPSQFHPGSSVNRGRKTFHGAGRKGWRPAK* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1084 538 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 12 531 - -
Apr3g1084 538 MobiDBLite consensus disorder prediction 505 538 - -
Apr3g1084 538 Gene3D Probable tRNA pseudouridine synthase domain 149 254 IPR038664 -
Apr3g1084 538 MobiDBLite consensus disorder prediction 293 315 - -
Apr3g1084 538 MobiDBLite consensus disorder prediction 505 519 - -
Apr3g1084 538 MobiDBLite consensus disorder prediction 77 97 - -
Apr3g1084 538 Pfam Gar1/Naf1 RNA binding region 179 244 IPR007504 GO:0001522|GO:0042254
Apr3g1084 538 MobiDBLite consensus disorder prediction 1 31 - -
Apr3g1084 538 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 12 531 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Apr3g1084 538 MobiDBLite consensus disorder prediction 275 332 - -
Apr3g1084 538 MobiDBLite consensus disorder prediction 52 166 - -
Apr3g1084 538 MobiDBLite consensus disorder prediction 112 135 - -
Apr3g1084 538 SUPERFAMILY Translation proteins 177 240 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1084 Apr-Chr3 25477921 25480844 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1084 K14763 - gmx:102660668 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1084 3 25477921 25480844 Apr3g1084 3 25477921 25480844 ECH