Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0930 ATGCGCGGCTCCACCGTTAGAAACCTATGCACCCTCAGCACCCTTTTCCGCCCACATTTAACCCGCATAGCCAATAACAACAACAACATTGCCCCTTTCATAGATTCCTCTTCTGAAACCCAACAACTGCACCTCTCAAAACACAACCACACTCGTGACTCTACCTCAGGGGATTTGTCTAATGAAGATGCGGGCACTTTTCGGCTTTCTGCTATATTGTGCCCTACGCAGGAAAAGAAGCCTGATTCAGAGGAAATTGATGATGAAGAAAAAGGGATAAAAAAATTAGACATGCCATGGATAGCAGACCTGCCTCCTGGTAATTTGGTCATAAAACGGAAGGAGTTAGCTCGTCAGAGGAAACAGAAGTGGTTTTTTACATACACAAATGATATCCGTTTTACTAAGTTGATAAATTTGTGTGCGAATAAACTAGGAACAAGAAAAACTGTCAATGTGTTTGGTCACTTGGGTCGACAAACAGGAGTGAAAGAGTACAACGCATTAATAAAAATGTGCGTAGAGAAGGCTAGGGCAACTGACGATGAATTCATTGCCGTAAAAGAAATGAGTAAGGCTTTTCACCTTGTCAAATCAATGAAGGAATTTGGTTATCCGCTAGAAGAGAAAACATATGGCCCACTTCTCCAGTATATAATTGATATGGGTTTGGTTGAAGAATATCAACTTTTCTCTGATTTTATCAGAGCTGGGAACCCCAGTTCTGCTCCTCGATTGGGTTATTATGAAATGTTGCTGTGGTTAAGAGTTAACAATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTTGAAGATGGTGAAGACACATCTGCTTTACGAGAAAGTTACGTAATGGCTCTTTGTGAAAGTGATCGGAAGATGCAGATTTTGGATGTGCTAAAGAATATAGACATCACAAAGTTTTCATCTGCAAAATCTATTGCGAAAATATTCCAATCATTAGGCAGTCTACCGCAGGAATCTGTTGTGGACGATTTACTTTTGGATTTGAGAGCATGCGATCACGATGCAGATAATATTTCAAACTTCATTGTTAGTTATGCTGTTAGCATTCCAAATTTAGCGGTTGAGGATATCGTTTCAAAAGTCAAGAATATGCATGAATTATTGGAAGTGTTGCCTTCATCCTCATCCTATGAAAGACTCATTTTGCATTGCTGTGGCTTAGACAAGGTGGGCATAGCTCTTGATATTGTTGAGAAAATGTGTGAAGCTGGCTTCACCTTGTCAATTGAGGTGTTACAATCCATATTACAAAAATGTGAGGAATCTTATGAATATATGCTGGTCCATCGAATCTATTCCATAATACGTAGCTACCATTTGGAGTTGAATGGTGAAGTATGCAGGTCTTTGGTGCACTTTCTTGTGAGGATGAAAGATTTTGAAGCTGCATACAAGATGATTGGTGACCTAGAGGAAATGAACTTCAAAGCTACGTCAGGCATGTACAATGCTATAATGGCAGGATATTTTCGAGAGAAAAACATCAGTGGTGGGTTAAAGGTCCTCAAGCACATGCGAGATGCCAACATAAAACTTGATTCTCATACTTTCTTCTATTTGATTTACAATTGTGAAACGGAAGAGGATATAATCAAGTACTACGAAGAAATGAAGCAATGTGGAGTCCAACCTACAAAGCAAATTTTTGTGGCCCTCATTAATTCATATGCAGCTTGTGGAAATTTGGAGAGGGCAAAACAGGTAGTTTTAGATCCAAACATACCAAACAAGAGCTTAAATGAAATCAAGAGTGTCCTTGTCTCAGCTCTTGCATCTCATGGACAATTGTCCGACGCTCTTCTTGTATATGAGGAGATTAAGAAAGCTGGACACAATTTGGAGCCGAAAGCCATTTTAAGCCTGACTGTATGGAGGAGTTCACTCAATTCAACGGAGAGTTGGATGGGCTGCTGCTTCTACTTAAGGAATTGA 1965 0.3964 MRGSTVRNLCTLSTLFRPHLTRIANNNNNIAPFIDSSSETQQLHLSKHNHTRDSTSGDLSNEDAGTFRLSAILCPTQEKKPDSEEIDDEEKGIKKLDMPWIADLPPGNLVIKRKELARQRKQKWFFTYTNDIRFTKLINLCANKLGTRKTVNVFGHLGRQTGVKEYNALIKMCVEKARATDDEFIAVKEMSKAFHLVKSMKEFGYPLEEKTYGPLLQYIIDMGLVEEYQLFSDFIRAGNPSSAPRLGYYEMLLWLRVNNEEMIRDICEYITVEDGEDTSALRESYVMALCESDRKMQILDVLKNIDITKFSSAKSIAKIFQSLGSLPQESVVDDLLLDLRACDHDADNISNFIVSYAVSIPNLAVEDIVSKVKNMHELLEVLPSSSSYERLILHCCGLDKVGIALDIVEKMCEAGFTLSIEVLQSILQKCEESYEYMLVHRIYSIIRSYHLELNGEVCRSLVHFLVRMKDFEAAYKMIGDLEEMNFKATSGMYNAIMAGYFREKNISGGLKVLKHMRDANIKLDSHTFFYLIYNCETEEDIIKYYEEMKQCGVQPTKQIFVALINSYAACGNLERAKQVVLDPNIPNKSLNEIKSVLVSALASHGQLSDALLVYEEIKKAGHNLEPKAILSLTVWRSSLNSTESWMGCCFYLRN* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0930 654 Gene3D Tetratricopeptide repeat domain 384 537 IPR011990 GO:0005515
Apr3g0930 654 Gene3D Tetratricopeptide repeat domain 121 328 IPR011990 GO:0005515
Apr3g0930 654 TIGRFAM PPR: pentatricopeptide repeat domain 492 524 IPR002885 -
Apr3g0930 654 PANTHER OS02G0132600 PROTEIN 8 633 - -
Apr3g0930 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Apr3g0930 654 Gene3D Tetratricopeptide repeat domain 538 583 IPR011990 GO:0005515
Apr3g0930 654 PANTHER OS02G0132600 PROTEIN 8 633 - -
Apr3g0930 654 Pfam PPR repeat 596 621 IPR002885 -
Apr3g0930 654 Pfam Pentacotripeptide-repeat region of PRORP 386 526 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0930 Apr-Chr3 24257302 24272919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0930 386 626 Glycosyltransferase AT1G05670 20.717 6.58e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0930 - - aprc:113858099 1286.17