Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0898 ATGAATTCTGGTGGATATACTATAGAAGTTACAGGATTATCACCTAAAGCCACTGAGAAGGATGTGTATGACTTTTTTGCTTTCTCTGGTGCAATTGAGTACGTTGAAATTGTCAGGTCTGGTGATAGTGCCTGTACTGCTTATGTAACATTCAAAGATGCTTATTCTCAAGAAACTGCTTGCTTGCTCAGTGGAGCCACTATTTTAGATCATCGTGTATGCATAACTCGCTGGGGGCAGTATGAAGATGAATTTGACTTTTGGAACCGACCCTCCTATGGGCCTGAGGAGGATACCGCTTCAACTACTCTACACAGCAGTCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACTGTGGCTCAAGAAGTTGTCAAGACCATGCTGGCAAAGGGATATGTTCTCAGCAAGGATGCATTAGCTAAGGCTAAAGACTTCGACGAGTCTCATCAAGTTTCTGCCACTGCAACAGCGAAGGTTGCTGAACTGAGCCAGAGAATTGGCCTCACTGATAAGATATCTGCTGGCGTTGAAGCGGTTAAATCCGTGGATGAAAGGTATAATGTTTCTGTCACTGCCAAGTCAGCTGCATCCGCAACCGGAAGATCAGTAGCAGCAGCTGCAAACACTGTGGTGAATAGTAGCTATTTTTCAAAGGGTGCCTTGTGGGTGTCAGGTGCTCTAACGCGGGCGGCACAGGCTGCTGCTGATTTGGGCAATCGCAGTGCTAAGCAGTGA 735 0.4612 MNSGGYTIEVTGLSPKATEKDVYDFFAFSGAIEYVEIVRSGDSACTAYVTFKDAYSQETACLLSGATILDHRVCITRWGQYEDEFDFWNRPSYGPEEDTASTTLHSSQFVSSAGEAVTVAQEVVKTMLAKGYVLSKDALAKAKDFDESHQVSATATAKVAELSQRIGLTDKISAGVEAVKSVDERYNVSVTAKSAASATGRSVAAAANTVVNSSYFSKGALWVSGALTRAAQAAADLGNRSAKQ* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0898 244 Gene3D - 2 83 IPR012677 -
Apr3g0898 244 SMART rrm1_1 7 77 IPR000504 GO:0003723
Apr3g0898 244 SUPERFAMILY RNA-binding domain, RBD 4 77 IPR035979 GO:0003676
Apr3g0898 244 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 244 - -
Apr3g0898 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Apr3g0898 244 CDD RRM_Vip1_like 8 76 IPR034360 -
Apr3g0898 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 72 IPR000504 GO:0003723
Apr3g0898 244 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0898 Apr-Chr3 23211879 23221200 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0898 - - gmx:100805907 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0898 3 23211879 23221200 Apr3g0898 3 23211879 23221200 ECH