Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0879 ATGAGCATCTCCAACGCCGTTTCCATAGACCCACTCTTATTAAGCTTCAACCTTAGCAGCAACTACCGCAAAGAAAGAGAAGCTTCCATTCACCGTTCCAAGCCCAAGCCATTCTCTCTCACTTCTTCTTCCACTCTTACCCTATTCAGCACCACCAACAACAACAACTATAACTATGTCTCTTGCAAACCCCACAAGTTTCACGGTCCGACGTTTGAAGCTTTTGCTACAAACACTGATACCCTTGAGTCTCTTCCATCCTCAGATGTTTTATTCAACCAGACTTTCCCTGTCAACCGAATTGAACTGGTTGAGGGAAAGATCTTTGTGAGATTAGATCAGGGAAAGGATTTGAGAAATTGGGAGCTTACAGTGGGTTGCAATCTATCAGGGAAGTGGATTCTTCATTGGGGTGTTTCCCGTGTGGATGATGTTGGAAGTGAATGGGATCAACCTCCCCATGATATGATACCCCCTGGATCGATTCCTATAAAGGACTATGCAATAGAGACCCCTATGAAGAAATCAGCATCTACTGCTGAAGGAGATACTTTTCACGAAGTCAGGATTGATCTTAAACCCCACAATGAAATTTCAGCGATTAATTTTGTTCTCAAGGATGAGGAAACTGGTGCTTGGTATCAACACAAAGGAAGAGATTTCAAGGTTCCTCTGGTCAACTACCTTAAGGAGGAAGCTAATGTTATTGGACCTAAAAGGGGCTTTAGTTTGTGGCCAGGGGCCTTGGGGCAGATATCTAACATTCTCCTCAAGTCAGAAGCAACACATGACAAAGTTCAAGATGACAACAGTGGATCCATAGATCCAAAACTGGAAAATAGTCAACTAGAAGGTTTTTATGTAGAACTGCCTATTGCCAAGGAAGTTATTTTCAATAACTCTATCAGTGTCTCCATTAGGAAATGCTCTGAGACAGCTAATAATCTTTTATATTTAAAAACGGATATACCTGGAGATATTCTCCTTCATTGGGGAGTTTGTAGGGATGATTTGATGTGGTGGGAAATTCCACCTGCTCCTCATCCACCAGAAACAGTAGCATTTAAAGACAGAGCTTTAAGAACTAAATTACAGTCAAGAGACAATGGAGAGGGAAGTTCAGTGCAGCTCTCTTTGGGAGGGGAATTTTCTGGATTTCTTTTTGTGCTTAAGCTAAATGATAATACCTGGTTAAATGACAACGGAAATGACTTTTATATCCCTCTCTCAAGTTCTAGTAGCTTAATAATGGACAACAGAGAGGGTCAATCAGAACCTGTGCAGAGAGAAGTGATAGAAGAGGCAGGTCAAGAGGAATCTAGCTCTGCATTTACTGATGGAATAATTAATGAAATAAGGCATTTGGTGACAGACATTTCCTCTGAAAAGAATCGAAACACAAAATCCAAGAAAGCACAAGAAAGCATTCTTCAAGAAATTGAAAAACTAGCTGCTGAAGCCTATAGTATCTTTAGAAGCTCAGTTCCGACTTTTACAGAGGAAACTATTGCGGAATCTGAGGCTGCTTTGGAATCTAAGACTCTAATATCGCCTGACTTGCCTCTACAAGTATCCTCGGGAACAGGCACAGGGTATGAAATACTATGCCAAGGGTTTAACTGGGAATCCCATAAATCTGGAAAATGGTACATGGATCTTAAAGAGAAAGCTGCAGAACTGGCGTCATTTGGCTTCACTGTGATATGGTTACCACCCCCTACAGAGTCTGTTTCACCTGAAGGATATATGCCGAAGGATTTATACAATTTAAATTCTAGATATGGAACCATTGATGAACTGAAGGATGTGGTGAAAACATTTCATGAAGTTGGAATCAAAGTGCTTGGAGATGTTGTTTTAAATCACCGCTGTGCTCACTATAGGAATCAGAATGGTATTTGGAACATATTTGGAGGTCGTCTTGACTGGGATGATCGTGCAATTGTAGCTGATGATCCACATTTTCAGGGGAGGGGCAACAAGAGTAGTGGAGACAATTTTCATGCTGCTCCAAACATTGATCATTCACAGGAATTTGTGAGAAAGGATCTTAAAGAATGGTTATGCTGGTTGAGGAAAGAAATTGGGTATGATGGGTGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAGGACTACCTGGAAGCAAGTGAACCATACTTTGCAGTAGGAGAGTACTGGGATTCCCTTAGCTATACATATGGTGAAATGGATCATAATCAAGATGCACACAGGCAGAGGATCATTGACTGGATCAATGCTACTAGTGGTATCGCTGGTGCATTTGATGTTACAACCAAAGGGATTCTTCACTCTGCTTTGGAAAGATGTGAATATTGGCGCTTGTCAGATCAGAAAGGAAAACCCCCTGGTGTTCTTGGATGGTGGCCATCTCGTGCTGTTACTTTTATAGAAAACCATGACACTGGTTCTACCCAGGGTCATTGGAGATTTCCTAATGGAAAAGAAATGCAAGGATATGCCTACACTCTTACTCACCCAGGAACACCATCAGTGTTCTTTGACCATCTTTTCTCTCACTACAAAACTGAAATAGCAGCACTACTCTCTATCAGAAAGCAGAACAAGATCCACTGCAGGAGTACAGTTCAAATTTGCAAGGCAGAAAGGGATGTTTATGCTGCTATCATAGATGAAAAAATTGCTATGAAGATTGGACCTGGTCATTTTGAACCACCTAGTGGATCCCAAAATTGGTCCTCAGCTTGGGAGGGAAGAGATTATAAGATTTGGGAGGCGTCATAA 2775 0.4148 MSISNAVSIDPLLLSFNLSSNYRKEREASIHRSKPKPFSLTSSSTLTLFSTTNNNNYNYVSCKPHKFHGPTFEAFATNTDTLESLPSSDVLFNQTFPVNRIELVEGKIFVRLDQGKDLRNWELTVGCNLSGKWILHWGVSRVDDVGSEWDQPPHDMIPPGSIPIKDYAIETPMKKSASTAEGDTFHEVRIDLKPHNEISAINFVLKDEETGAWYQHKGRDFKVPLVNYLKEEANVIGPKRGFSLWPGALGQISNILLKSEATHDKVQDDNSGSIDPKLENSQLEGFYVELPIAKEVIFNNSISVSIRKCSETANNLLYLKTDIPGDILLHWGVCRDDLMWWEIPPAPHPPETVAFKDRALRTKLQSRDNGEGSSVQLSLGGEFSGFLFVLKLNDNTWLNDNGNDFYIPLSSSSSLIMDNREGQSEPVQREVIEEAGQEESSSAFTDGIINEIRHLVTDISSEKNRNTKSKKAQESILQEIEKLAAEAYSIFRSSVPTFTEETIAESEAALESKTLISPDLPLQVSSGTGTGYEILCQGFNWESHKSGKWYMDLKEKAAELASFGFTVIWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDVVKTFHEVGIKVLGDVVLNHRCAHYRNQNGIWNIFGGRLDWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDLKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINATSGIAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPNGKEMQGYAYTLTHPGTPSVFFDHLFSHYKTEIAALLSIRKQNKIHCRSTVQICKAERDVYAAIIDEKIAMKIGPGHFEPPSGSQNWSSAWEGRDYKIWEAS* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0879 924 PANTHER ALPHA-AMYLASE 93 924 - -
Apr3g0879 924 Gene3D - 867 923 IPR013780 -
Apr3g0879 924 SMART alpha-amyl_c2 863 923 IPR012850 GO:0004556|GO:0005509|GO:0005975
Apr3g0879 924 SMART aamy 533 868 IPR006047 GO:0005975
Apr3g0879 924 SUPERFAMILY (Trans)glycosidases 530 850 IPR017853 -
Apr3g0879 924 Pfam Alpha amylase, catalytic domain 560 756 IPR006047 GO:0005975
Apr3g0879 924 PRINTS Alpha-amylase signature 611 622 IPR006046 GO:0004556|GO:0005975|GO:0043169
Apr3g0879 924 PRINTS Alpha-amylase signature 697 708 IPR006046 GO:0004556|GO:0005975|GO:0043169
Apr3g0879 924 PRINTS Alpha-amylase signature 801 813 IPR006046 GO:0004556|GO:0005975|GO:0043169
Apr3g0879 924 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 93 924 - -
Apr3g0879 924 Gene3D Glycosidases 533 866 - -
Apr3g0879 924 Pfam Alpha-amylase C-terminal beta-sheet domain 865 922 IPR012850 GO:0004556|GO:0005509|GO:0005975
Apr3g0879 924 CDD AmyAc_arch_bac_plant_AmyA 534 873 - -
Apr3g0879 924 SUPERFAMILY Glycosyl hydrolase domain 867 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0879 Apr-Chr3 22871366 22881555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0879 71 924 Glycoside Hydrolase AT1G69830 68.150 0.0 1228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0879 K01176 - gmx:100788193 1674.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0879 3 22871366 22881555 Apr3g0879 3 22871366 22881555 ECH