Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0872 ATGAAAAGCATTGCAAAGCACTCCACCATTTCACTCGTAAAATCATGCACCAAATTGAAAGAACTGAAGCAAATACACGCCAAGTTGGTTGTTGAAGGCATCCTCAACCACCCTCCCATCCATGGCCAATTCGTTGCCACCATAGCCATTCACAACCCTTCCAATCTTGACTATGCCAACCATGTCCTTAACCAATGTGACCACCCCACCATCTTTACCCTCAACTCCATGATCAGAGCCTACTCCAAGAGCCCCTCTCCCCACAAAAGCTTCTATTTTTACACCAAGATTCTCCATTCCCACTGTCTCCACCCTGATAACTACACCTTCAACTTCTTGGTTCGCACGTGTGCTCAGCTTCAGGTGCACGTGACTGGTTTGTCTGTTCATGGTGCACTCGTAAAGCACGGGTTTGAGCATGACCCACACGTGCAAACCGGGTTGATTTTCATGTATGCTGAAATGGGTTGTCTTAATTCGTGCCATGGAGTGTTTGAAGGGATTGCTGAGCCAGACTTGGTTTCTCAAACGGCCATGTTGCATGCTTGTGCTAAATGTGGTGATTTTGAGCTTGCAAGGAAGATGTTTGATGAAATGCCTCAAAGAGATCCTATTGCATGGAATGCAATGATTGCAGGGTATGCACAATGTGGAAGGTCAAGGGAAGCTTTAAATATGTTCCACTTGATGCAAATGGAGGGTGTCAAGCTTAATGAGGTCTCCATGGTTTCAGCATTGTCTGCTTGTACCCACTTGGGAGCATTGGATCAGGGAAAGTGGGTTCATTCATATGTGGAGAGGTACAAGCTTGGGATGACAGTCACACTAGGAACTGCACTCATTGACATGTATGCAAAATGTGGGAGCATTGATAAGGCCATGGAAGTATTTTGGGGAATGAAGGAAAAGAATGTTTACACTTGGAGTAGTGCCATTGGTGGATTGGCCATGAATGGTCTTGGTGAGGAGAGTCTAAATCTTTTTTCCTCTATGAAACAAGTTGGAGTTCAGCCAAATAAAGTCACCTTTCTGTCTGTCTTGAAAGGGTGCAGTGTGGTTGGAATGGTGGAGGAGGGTAGAAAGCATTTCAACTCAATGAGGAATCTTTATGGGATTGATCCACAACTTGAGCACTATGGCTTAATGGTTGATATATATGGTAGAGCAGGGTGTCTTGAGGAAGCTTTAGACTTCATCAATAGCATGCCTATGAAACCTCATGTTGGTGCATGGAGCGCCTTGCTTCATGCTTGTAGGATGTATAAAAATAGAGAAATGGGTGAGCTTGCACTGAAAAAAATAGTGGAACTAGAAGACAAGAATGATGGTGCTTATGTCCTTTTATCAAATATATATGCTGATTATAAGAATTGGGAAAAAGTTAGTAGTTTGAGGGAGACCATGAAAGCTAAAGGTGTGAAGAAGCTCCCTGGTTGTAGTGTCATAGAAGTTAATGGTGAAGTTCACGAGTTTTTTGTTGGGGACAAGTCTCATTCAAGATATGATGAGATTGAATTAAAGCTAGAAGAAATCTCTAGGTGTCTTAGATTAGCAGGGTATGTGGCTAACACTAATCATGTGCTTTTTGATATAGAAGAAGAGGAGAAAGAGGATGCTTTGGGTAAACATAGTGAAAAGGTAGCTATTGCCTTTGGATTAATTAGTTTGAAAGGGGTTCCCATTAGGGTTGCTATGAACCTGAGGATTTGTTGGGATTGCCATAATGTAGCAAAAATGATATCCAAAATTTTTAACACAGAAATTTTTGTTAGAGACAGAAACAGGTTTCATCATTTTAAAGACGGTGAATGCTCTTGTAAAGGTTATTGGTAA 1833 0.4195 MKSIAKHSTISLVKSCTKLKELKQIHAKLVVEGILNHPPIHGQFVATIAIHNPSNLDYANHVLNQCDHPTIFTLNSMIRAYSKSPSPHKSFYFYTKILHSHCLHPDNYTFNFLVRTCAQLQVHVTGLSVHGALVKHGFEHDPHVQTGLIFMYAEMGCLNSCHGVFEGIAEPDLVSQTAMLHACAKCGDFELARKMFDEMPQRDPIAWNAMIAGYAQCGRSREALNMFHLMQMEGVKLNEVSMVSALSACTHLGALDQGKWVHSYVERYKLGMTVTLGTALIDMYAKCGSIDKAMEVFWGMKEKNVYTWSSAIGGLAMNGLGEESLNLFSSMKQVGVQPNKVTFLSVLKGCSVVGMVEEGRKHFNSMRNLYGIDPQLEHYGLMVDIYGRAGCLEEALDFINSMPMKPHVGAWSALLHACRMYKNREMGELALKKIVELEDKNDGAYVLLSNIYADYKNWEKVSSLRETMKAKGVKKLPGCSVIEVNGEVHEFFVGDKSHSRYDEIELKLEEISRCLRLAGYVANTNHVLFDIEEEEKEDALGKHSEKVAIAFGLISLKGVPIRVAMNLRICWDCHNVAKMISKIFNTEIFVRDRNRFHHFKDGECSCKGYW* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0872 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Apr3g0872 610 Pfam E+ motif 488 513 IPR046849 -
Apr3g0872 610 Pfam PPR repeat family 303 350 IPR002885 -
Apr3g0872 610 Pfam PPR repeat family 204 249 IPR002885 -
Apr3g0872 610 TIGRFAM PPR: pentatricopeptide repeat domain 206 239 IPR002885 -
Apr3g0872 610 TIGRFAM PPR: pentatricopeptide repeat domain 175 202 IPR002885 -
Apr3g0872 610 TIGRFAM PPR: pentatricopeptide repeat domain 278 305 IPR002885 -
Apr3g0872 610 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Apr3g0872 610 Pfam E motif 421 483 IPR046848 -
Apr3g0872 610 PANTHER OS01G0715700 PROTEIN 14 584 - -
Apr3g0872 610 Pfam PPR repeat 378 403 IPR002885 -
Apr3g0872 610 Pfam PPR repeat 177 202 IPR002885 -
Apr3g0872 610 Gene3D Tetratricopeptide repeat domain 169 274 IPR011990 GO:0005515
Apr3g0872 610 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 14 584 - -
Apr3g0872 610 Gene3D Tetratricopeptide repeat domain 3 168 IPR011990 GO:0005515
Apr3g0872 610 Gene3D Tetratricopeptide repeat domain 276 491 IPR011990 GO:0005515
Apr3g0872 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 202 IPR002885 -
Apr3g0872 610 SUPERFAMILY TPR-like 184 460 IPR011990 GO:0005515
Apr3g0872 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Apr3g0872 610 Pfam DYW family of nucleic acid deaminases 519 610 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0872 Apr-Chr3 22751830 22753662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0872 6 610 Glycoside Hydrolase AT3G49170 35.057 1.07e-119 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0872 - - gmx:100795404 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0872 3 22751830 22753662 Apr3g0872 3 22751830 22753662 ECH