Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0840 ATGACTAAACCCCACCCTTATTATTTCATCCTAGCTTTCGCAATTTCCTTCTTTCTCACTAACGCCGTCGTTTCAGCTCGACTCTTCCCCAACGTCTCTTCCCTGCTCCCCGCCAACGAGCCCCTCCGCGGCGCGTGGGACGCCTTCCGCAATCTTTCTGGCTGTCACCGCGGCAAGAACTACGACGGCCTTGCCAGTCTCAAAAGCTATTTCCAACATTTCGGCTACATACCACACGCGCCGCCGTCGAACTTCTCCGACGAGTTCGACGACGCTCTCGAATCCGCCATCAAAACCTACCAGAAGAACTTCAACCTTAACGTCACCGGCGTTCTCGACGACGACACTCTCCGGCAGATCGTCCTGCCGCGGTGCGGTGTTGCCGACATCATCAACGGCACCTCGACGATGAACGCCGGCAAGGCGAACCAAACGACGTCGTTTGGCGACAGCAAACCGCGGTTCCGCACGGTTTCGCACTTCACTCTCTTCCCCGGCCGGCCGCGGTGGCCGGCGGCAGCGGAGGAGCTGACATATTCATTCTTCCCAGGTAACGACCTGAGTCAAGCCGTGAAAGGCGTTTTCGCAGCGGCGTTTGCGCGGTGGTCGGAGGTGTCGCCGTTGAAGTTCCGGGAAACGGCGTCGTATTACAGTGCCGACATTACGATAGGGTTCTTCAGCGGTGACCACGGGGACGGAGAACCGTTCGACGGGATTTTGGGGACGCTGGCGCACGCGTTCTCGCCAACGAACGGGAGGTTCCACCTGGACGCCGCTGAGGACTGGGTGGTGGCCGGCGAAGTGACGAAGTCGGCGTTGCCGACGGCGGTGGATTTGGAATCGGTGGCGGTGCATGAGATTGGGCATCTTCTAGGGTTAGGGCACTCGTCGAAGGAAGAAGCGGTTATGTTTCCGACAATATCTTCGCGGAAGAAGAAGGTGGTTCTGGCGGAGGATGATATACAGGGAATTCAATTCCTCTACGGTTCCAACCCCAATTACAATGGTTCGACTGCCACGTCAGCACCGGAGAGGGACTCCAGTGACGGTGGTCGTTGTCTCACTTGTGTGGGGTCCTCTTGGGGCTTTCTCACTTTGTTGACTTTTGCATTTTCGCATTTTGCGTTTTTAGATTTATTCATCATTTATTGA 1152 0.5651 MTKPHPYYFILAFAISFFLTNAVVSARLFPNVSSLLPANEPLRGAWDAFRNLSGCHRGKNYDGLASLKSYFQHFGYIPHAPPSNFSDEFDDALESAIKTYQKNFNLNVTGVLDDDTLRQIVLPRCGVADIINGTSTMNAGKANQTTSFGDSKPRFRTVSHFTLFPGRPRWPAAAEELTYSFFPGNDLSQAVKGVFAAAFARWSEVSPLKFRETASYYSADITIGFFSGDHGDGEPFDGILGTLAHAFSPTNGRFHLDAAEDWVVAGEVTKSALPTAVDLESVAVHEIGHLLGLGHSSKEEAVMFPTISSRKKKVVLAEDDIQGIQFLYGSNPNYNGSTATSAPERDSSDGGRCLTCVGSSWGFLTLLTFAFSHFAFLDLFIIY* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0840 383 Gene3D Collagenase (Catalytic Domain) 52 335 IPR024079 GO:0008237
Apr3g0840 383 PANTHER MATRIX METALLOPROTEINASE 31 367 - -
Apr3g0840 383 PANTHER MATRIX METALLOPROTEINASE 31 367 - -
Apr3g0840 383 SMART col_5 166 330 IPR006026 GO:0006508|GO:0008237|GO:0008270
Apr3g0840 383 Pfam Putative peptidoglycan binding domain 65 119 IPR002477 -
Apr3g0840 383 CDD ZnMc_MMP 176 329 IPR033739 GO:0008237|GO:0008270
Apr3g0840 383 Pfam Matrixin 174 329 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Apr3g0840 383 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 163 333 - -
Apr3g0840 383 SUPERFAMILY PGBD-like 67 130 IPR036365 -
Apr3g0840 383 PRINTS Matrixin signature 120 133 IPR021190 GO:0004222|GO:0006508|GO:0008270
Apr3g0840 383 PRINTS Matrixin signature 195 210 IPR021190 GO:0004222|GO:0006508|GO:0008270
Apr3g0840 383 PRINTS Matrixin signature 219 247 IPR021190 GO:0004222|GO:0006508|GO:0008270
Apr3g0840 383 PRINTS Matrixin signature 282 307 IPR021190 GO:0004222|GO:0006508|GO:0008270
Apr3g0840 383 PRINTS Matrixin signature 316 329 IPR021190 GO:0004222|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0840 Apr-Chr3 21859324 21860884 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0840 - - aprc:113858627 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0840 3 21859324 21860884 Apr3g0840 3 21859324 21860884 ECH