Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0838 ATGGACCATCTCAGTCTTATTCTCCTACTCTTCCTGTTCCTTCCCACCTGCTTCTCTACCTTTCAAACTCCTTTCCACAAGGAATTTTCAAATCAAAGCTCTTCTTTGAAGCAGCAGATTTTTGAGTTAGCTAACAATCCTAGCATGGTGGAATGGATGAAGAGTATAAGGAGGGAAATTCATGAGTACCCAGAACTTGCATATGAAGAGTTCAAGACAAGTGCTCTCATAAGACGTGAGCTTGACAAGTTGGGTGTTAATTACAAGTGGCCTGTGGCAAAGACTGGTGTGGTGGCTAAAATTGGTTCTGGGTCTCCCCCTTTTGTTGCACTTAGAGCAGACATGGATGCTTTGCCTATTCAGGAATTGGTTGATTGGGATCATAAGAGCAAAGTAGATGGCAAAATGCATGCTTGTGCGCACGATGCACATGTTGCCATGCTTCTTGGGGCTGCAAAGATACTGCAAGAAATGCAAGAAAAGTTACAGACTACTGTGGTGTTAATATTCCAACCAGCTGAGGAAAAAGGCACAGGTGCAAAAGACATGATCCAAGAACAGGTGCTTGAAGATGTAGGGGCTATTTTCGGGTTGCACTTGGGGCCAGAGTATCCCACGGGAGTTGTTGCATCACGGCCCGGAGAATTTTTAGCCGGATGTGGAAGCTTCAAAGCAAAGATCAATGGAAGAGGAGGTTTAGCAGGAATTCCCCAACATTGTTTTGATCCAGTTATTGCTGCTTCAACATCAGTGATTAGCTTGCAAAACATTGTCTCAAGGGAGGCTGACCCTTTGGATTCTCAGGTGCTTTCTGTGGCCATGGTCCATGCAGGGTCTGCTCATGACATCATCCCTGATTCAGCCACAATTGGAGGCACTTATAGAGCATTCAGCAAAAAAAGCTTCTATGCACTGAGGAAAAGGATAGAAGAGGTTATTAAAGGGCAAGCAGAAGTGCATAGGTGCTCTGCAGAGGTTCAGTTCTTTGGTAATGGACATCCCACAATCCCTCCAACTACAAATGATGAGAGAATATACCAATTAGCACGGCAAGTCTCAAGTAAGATTGTTGGAGAAGAAAACGTAGAATTATCCCCCGTCTTCACAGCGAGTGAAGACTTTGCATTTTACTTGGAAAAAGTACCTGGCTCATTCCTTCTTGTGGGAATGAGAAATGAGAAGAGTGGATCCGTATATCCTGCTCATAGTCCCTACTTTTTAGTTGACGAAGATGTGCTTCCCATTGGAGCTGCAATTCATGCAGCATTTGCTCTTTCATACCATTCATATTCAACTAATTCTTACTTTTAG 1311 0.4371 MDHLSLILLLFLFLPTCFSTFQTPFHKEFSNQSSSLKQQIFELANNPSMVEWMKSIRREIHEYPELAYEEFKTSALIRRELDKLGVNYKWPVAKTGVVAKIGSGSPPFVALRADMDALPIQELVDWDHKSKVDGKMHACAHDAHVAMLLGAAKILQEMQEKLQTTVVLIFQPAEEKGTGAKDMIQEQVLEDVGAIFGLHLGPEYPTGVVASRPGEFLAGCGSFKAKINGRGGLAGIPQHCFDPVIAASTSVISLQNIVSREADPLDSQVLSVAMVHAGSAHDIIPDSATIGGTYRAFSKKSFYALRKRIEEVIKGQAEVHRCSAEVQFFGNGHPTIPPTTNDERIYQLARQVSSKIVGEENVELSPVFTASEDFAFYLEKVPGSFLLVGMRNEKSGSVYPAHSPYFLVDEDVLPIGAAIHAAFALSYHSYSTNSYF* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0838 436 Pfam Peptidase family M20/M25/M40 110 424 IPR002933 GO:0016787
Apr3g0838 436 Gene3D Zn peptidases 55 413 - -
Apr3g0838 436 SUPERFAMILY Bacterial exopeptidase dimerisation domain 218 337 IPR036264 -
Apr3g0838 436 CDD M20_IAA_Hyd 53 427 IPR044757 GO:0009850|GO:0016787
Apr3g0838 436 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 2 28 434 - -
Apr3g0838 436 TIGRFAM amidohydrolases: amidohydrolase 54 416 IPR017439 GO:0016787
Apr3g0838 436 Gene3D - 218 336 - -
Apr3g0838 436 PANTHER PEPTIDASE M20 FAMILY MEMBER 28 434 IPR017439 GO:0016787
Apr3g0838 436 SUPERFAMILY Zn-dependent exopeptidases 48 427 - -
Apr3g0838 436 PIRSF Amidohydrol_AmhX 37 430 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0838 Apr-Chr3 21828585 21831607 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0838 K14664 - gmx:100788267 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0838 3 21828585 21831607 Apr3g0838 3 21828585 21831607 ECH