Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0806 ATGGCTGCTTCAGAGAACGTTGTTGAATCACCAGTGAAGAGGCCAAGAGATGATGAAGAAAATGGGGTCTCAGTTTCCATGGAAATGGAGGGTGGCAAAGACCCTGATAGTAATGGTTTATCATCGGTGATTCCTGGGTGGTTCTCTGAAATCAGTCCAATGTGGCCTGGAGAGGCTCACTCCTTCAAGGTAGAAAAAATTTTGTTTCAAGGAAAGTCTGAATACCAGAATATAATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACAGAAAGGGATGAATGTGCCTACCAGGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAATCCTAAAAAGGTTTTGGTAATTGGTGGAGGTGATGGAGGGGTCCTGCGAGAAGTATCACGTCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAACATGGTTGTTGATATCTCGAAACAATTTTTCCCTGATGTAGCTGTAGGGTTTGAGGATCCTCGGGTAACACTTCGTATTGGTGATGGAGTTGCATTTCTGAAGGAAGTTCCAGAAGGAACATATGATGCAGTTATAGTGGATTCATCTGATCCTGTTGGTCCTGCTCAGGAGCTGTTCGAAAAGCCCTTTTTTGAGTCGGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTGTCTCTACACAGGCAGAAAGTATATGGCTTCATATGGATATAATTGAAAATATTGTGACCAATTGTCGCCAGATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACTGTTCCTACATACCCTAGTGGTATGATTGGTTTTATGCTTTGCGCAACTGAGGGACCACCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAAAGAGTGTCAGAAGTCAGCAAGACCACTGAAATTTTACAACTCAGAGATGCATACAGCAGCATTCTGCTTACCATCGTTTGCGAAGAGGAAAATTGGTTCTAAAGAAAATTGA 1008 0.4216 MAASENVVESPVKRPRDDEENGVSVSMEMEGGKDPDSNGLSSVIPGWFSEISPMWPGEAHSFKVEKILFQGKSEYQNIMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDNMVVDISKQFFPDVAVGFEDPRVTLRIGDGVAFLKEVPEGTYDAVIVDSSDPVGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMDIIENIVTNCRQIFKGSVNYAWTTVPTYPSGMIGFMLCATEGPPVDFKHPVNPIDEKECQKSARPLKFYNSEMHTAAFCLPSFAKRKIGSKEN* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0806 335 Pfam Spermine/spermidine synthase domain 103 290 - -
Apr3g0806 335 Gene3D Vaccinia Virus protein VP39 100 335 IPR029063 -
Apr3g0806 335 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 124 137 IPR030373 -
Apr3g0806 335 PANTHER SPERMIDINE/SPERMINE SYNTHASE 3 335 IPR001045 GO:0003824
Apr3g0806 335 PANTHER SPERMIDINE SYNTHASE-RELATED 3 335 - -
Apr3g0806 335 PIRSF Spermidine_synth 36 335 IPR030668 GO:0006595
Apr3g0806 335 Pfam Spermidine synthase tetramerisation domain 46 100 IPR035246 -
Apr3g0806 335 TIGRFAM speE: spermidine synthase 47 325 IPR001045 GO:0003824
Apr3g0806 335 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 43 330 IPR029063 -
Apr3g0806 335 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 45 282 IPR030374 -
Apr3g0806 335 Hamap Polyamine aminopropyltransferase [speE]. 46 331 IPR001045 GO:0003824
Apr3g0806 335 Gene3D Spermidine synthase, tetramerisation domain 26 99 IPR037163 -
Apr3g0806 335 MobiDBLite consensus disorder prediction 1 39 - -
Apr3g0806 335 CDD AdoMet_MTases 123 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0806 Apr-Chr3 21168464 21172449 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0806 K00797 - gmx:100776863 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0806 3 21168464 21172449 Apr3g0806 3 21168464 21172449 ECH