Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0804 ATGAACCCCATTAAACCACCCCCAATATATAACCCAATGTTACATATTTTTCTCCTCATATGTTCACAAAATATGGCACTTTGGCAACAAAAGCTACACCTCTTATATCTACTAATCCTTTGCTTAGCCACTGTGGTTTCTCCACACAGTAGGCCTTATACAACTCCAACTGTCACACACTTGACTGATTCTTTTCCTCGTGTCCCAGTTGATGGTGCTTTTACTAAGACTTTTGGGGCCTCAAATATCCAGTTTCTCAGTAATGGGTCCATGGCCACTCTGGCTCTTGACAAAATCTCAGGCTCTGGTTTGGCCTCACAAAGCAGATACTACTATGGATTCTTCAGTGCTGCAATCAAATTACCATCTGGTTTGTCATCTGGAGTTGTAGTTGCCTTTTATTTGTCGAATGCAGATAAATTCCCTCACAACCATGATGAGATAGACATTGAATTGCTTGGTCATGACAAGAGAAATGACTGGGTTATTCAAACAAACATTTATGCCAATGGAAGTGTCAGCACAGGAAGAGAAGAGAAATTCTATTTCTGGTTCGACCCAACACAGCAGTACCATTATTACAGCATTTTATGGAACAGTTATCACACAGTGTTCTTAGTGGACAACATTCCAGTGAGGGAATTCATACACAGCAACACATATCCTTCTATTTATCCATCAAAGCCAATGTCAGTGTATGCTACAATATGGGATGGTTCAGAATGGGCTACTCATGGAGCAACAGGTTCTTCATGTTCCAAGGCCAATCCTTCAGGCCTAGACCCCGTTAATGGACCCGAGTTTACAAAGCTATCACAGCAGCAGATAGCAGCTATGGATTGGGCAAGAAGGAAACTCATGTTTTACTCTTACTGCAATGACAGACCCAGATTCAAAGTCTTACCCCCAGAATGCCACTAA 921 0.4169 MNPIKPPPIYNPMLHIFLLICSQNMALWQQKLHLLYLLILCLATVVSPHSRPYTTPTVTHLTDSFPRVPVDGAFTKTFGASNIQFLSNGSMATLALDKISGSGLASQSRYYYGFFSAAIKLPSGLSSGVVVAFYLSNADKFPHNHDEIDIELLGHDKRNDWVIQTNIYANGSVSTGREEKFYFWFDPTQQYHYYSILWNSYHTVFLVDNIPVREFIHSNTYPSIYPSKPMSVYATIWDGSEWATHGATGSSCSKANPSGLDPVNGPEFTKLSQQQIAAMDWARRKLMFYSYCNDRPRFKVLPPECH* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0804 306 Gene3D - 54 305 - -
Apr3g0804 306 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 63 271 IPR000757 GO:0004553|GO:0005975
Apr3g0804 306 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 249 306 - -
Apr3g0804 306 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 26 247 - -
Apr3g0804 306 SUPERFAMILY Concanavalin A-like lectins/glucanases 71 305 IPR013320 -
Apr3g0804 306 Pfam Glycosyl hydrolases family 16 74 247 IPR000757 GO:0004553|GO:0005975
Apr3g0804 306 PIRSF EndGlu_transf 247 306 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr3g0804 306 PIRSF EndGlu_transf 29 257 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr3g0804 306 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 249 306 IPR044791 GO:0004553
Apr3g0804 306 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 26 247 IPR044791 GO:0004553
Apr3g0804 306 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 269 305 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0804 Apr-Chr3 21103527 21105588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0804 27 306 Glycoside Hydrolase AT1G10550 55.591 2.86e-127 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0804 K08235 - gmx:100778993 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0804 3 21103527 21105588 Apr3g0804 3 21103527 21105588 ECH