Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0801 ATGAAGCATTGGATGAGCATGAGATTGAGGCGCATGGCGATAGGATTAGGAGCAGTTTCAAATTTTACTCTCTTTCAACCCTTCCCTCTCCTATTCACTACACCCACTCGCTTAACCATCACCTTCACCTTCTCTTTCCCCAAAACGTCGTCGTATCTCCTTTCTACCCTCACTCGCCCCCGTCGCTTCCTCTCTGCTTCTGCTTTAACCACTGACGATTACAACTTCTCTCATTTCGAAGATGGTGACAGTGTTGCGATTTCAAGTAAAGGTTCGAAGACGCTTCTTAAAGGGATGACTTACCCTGAATTTGAAAAATGGGTTCAATCACATGGATACAGGCCTGGGCAAGCTATGATGTTATGGAAGCGTATGTATGGAAACAACATTTGGGCACATCATATTGATGAGTTGGAAGGTTTGAATAAAGATTTCAAGAAAATGTTGAATGAAAATGCTGAGTTCAAGGCGCTCGCTCTGCAAGAAATTCACACAGCATCTGATGGAACTAGGAAGATTTTATTCACGTTGGATGATGGTCTGGTCATAGAAACAGTTGTCATACCTTGTGACAGAGGAAGGACTACTGTGTGTGTTTCAAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTACACTGGAAGAATGGGTCTTAGGAGACATCTTACTGCTGCAGAAATAGTAGAGCAGGCTGTTTTTGCTAGAAGGCTGCTCACAAGCGAAGTTGGTTCCATCACAAACGTTGTCTTTATGGGCATGGGGGAACCACTTCATAACATTGATAATGTCATTAAAGCTGCAGATATAATGGTGGATGAGCAAGGGCTCTATTTCAGCCCCCGCAAGGTTACTGTTTCAACCAGTGGGCTTGTTCCACAGCTCAAACGCTTCCTCCATGAATCCAACTGTGCATTAGCTGTTAGTTTGAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGTAAGTATAAACTGGACTTGCTTCTTCAAACACTTCGAGAGGAGCTTTGCTTCAAAAACAACTACAAAGTTCTATTTGAGTATGTGATGCTCGAAGGAATTAATGACAGTGATGAAGATGCAAAGAGGCTTATCGAGCTCGTGGAGGGCATTCCTTGCAAGATTAATCTAATCTCATTCAATCCGCACAGTGGATCATTCTTCAGACCAACCAAAGAGGAAAGGATGATCGAATTCCGCAATACGCTGGCTGGTGCTGGATTGATAGTCTTTTTACGACTTAGCAGAGGTGATGATCAAATGGCTGCCTGTGGTCAATTAGGTAAGCCTGGTACCATTCAGGCTCCATTGCTTCGCGTACCAGAGCAATTCCAAATAGCAGTTGGAAATTCAACTTGA 1374 0.4316 MKHWMSMRLRRMAIGLGAVSNFTLFQPFPLLFTTPTRLTITFTFSFPKTSSYLLSTLTRPRRFLSASALTTDDYNFSHFEDGDSVAISSKGSKTLLKGMTYPEFEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLNENAEFKALALQEIHTASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLRRHLTAAEIVEQAVFARRLLTSEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDEQGLYFSPRKVTVSTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLDLLLQTLREELCFKNNYKVLFEYVMLEGINDSDEDAKRLIELVEGIPCKINLISFNPHSGSFFRPTKEERMIEFRNTLAGAGLIVFLRLSRGDDQMAACGQLGKPGTIQAPLLRVPEQFQIAVGNST* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0801 457 Gene3D - 93 156 - -
Apr3g0801 457 Gene3D Aldolase class I 158 438 IPR013785 -
Apr3g0801 457 Pfam Radical SAM superfamily 200 366 IPR007197 GO:0003824|GO:0051536
Apr3g0801 457 Coils Coil 138 158 - -
Apr3g0801 457 PANTHER 23S RRNA METHYLTRANSFERASE 78 440 IPR040072 -
Apr3g0801 457 Pfam 4Fe-4S single cluster domain 204 306 - -
Apr3g0801 457 SUPERFAMILY Radical SAM enzymes 193 413 - -
Apr3g0801 457 CDD Radical_SAM 204 404 - -
Apr3g0801 457 SFLD adenosine C2 methyltransferase (RlmN-like) 92 434 IPR004383 GO:0006364|GO:0008173
Apr3g0801 457 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 92 433 IPR027492 GO:0030488|GO:0070475
Apr3g0801 457 SFLD Radical SAM 92 434 IPR007197 GO:0003824|GO:0051536
Apr3g0801 457 ProSiteProfiles Radical SAM core domain profile. 191 424 IPR007197 GO:0003824|GO:0051536
Apr3g0801 457 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 78 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0801 Apr-Chr3 20987667 20992176 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0801 K06941 - gmx:100813692 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0801 3 20987667 20992176 Apr3g0801 3 20987667 20992176 ECH