Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0783 ATGGACAAATTCTTGTTGATTTCCTTACTTGGTTTGCTGATTGTGGCTCATGGAGTTGCAGGTAGCATGAAGTGTGACAACTTTGATATGCTTGAAGAACTTAAAAGCCTGGAGGACCTGGACATTGATGAAGAGACTGAGGTAGAACTCTCCGACATTCCTTCATGGAGAAGTGAGCGCGCCGGAAAGGTTCTTGTGAATGTTGATAGCTTTGGTGCTGCTGGAAATGGAGAATCTGATGACACCGAGGCTTTCCAAAAAGCATGGGAAGTTGCGTGCTCTACACCAAAATCTGTTCTATTAGTTCCTCAAGATCGCCGTTACCTAGTTAATGCAACAAAATTCAGAGGGCCTTGTGCAGACAAGCTAATCATCCAAATTGATGGAACATTGGTTGCACCAGATGAGCCTAAGGACTGGGATCCAAAACTGCAACGAGTCTGGCTTGATTTTTCTAAATTGGAAAAAGTTGTTTTTCAAGGTAATGGAGTTATTGATGGCTCAGGAAGCAAATGGTGGGCAGCATCTTGCAAAAAGAACAAGTCAAATCCTTGCAGAGGTGCACCAACGGCACTAACCATTGATTCAAGCTCAGCTATAAAGGTGAAAGGACTAACTATCCAGAATAGCCAACAGATGCATTTTACCATATCACGATGTGATTCTGTTAGAATTAGTGGCGTGAAAGTATCAGCACCCGGAGACAGCCCAAACACTGATGGAATTCATATTAGTGAATCCACAAATGTCATAATCCAAGACAGCAAAATTGGAACAGGGGATGATTGCATATCAATTGTCAATGCTAGCTCCAATATCAAGATGAAGAGAATTTATTGTGGACCAGGACATGGAATCAGCATTGGAAGCCTTGGGAAAGACAACTCAACTGGGATAGTCACGAAAGTTATTTTGGATACAGCAGTTCTTAGGGAGACTACCAACGGTGTCAGAATTAAGACTTGGCAGGGAGGTTCTGGGTATGTTCGAGGAGTTCGTTTTCAGAATGTGAGGGTGGAAAACGTATCAAACCCCATTATCATAGATCAATTTTACTGTGATTCGCCAACCACTTGTCAAACCCAGACATCAGCTGTGGAAATAAGTGAGGTTATGTACCAGAACATAAGTGGAACAACAATGAGTGCAAAGGCCATTAAATTTGATTGCAGTGATACAGCTCCATGCAGCAACCTAGTCCTTAGCAATGTGGACTTGGAGAAACAAGATGGCACTGTTGAAACATATTGTCACTCAGCTCAAGGCTTTGGCTATGGGGTGGTGCATCCTTCTGCTGATTGCCTCAATTCCAATGACAAAAATTCTCAAATTGAAGAATCAACTATGGAGGAAGATATTCGTCACACTGAACTATAA 1377 0.4227 MDKFLLISLLGLLIVAHGVAGSMKCDNFDMLEELKSLEDLDIDEETEVELSDIPSWRSERAGKVLVNVDSFGAAGNGESDDTEAFQKAWEVACSTPKSVLLVPQDRRYLVNATKFRGPCADKLIIQIDGTLVAPDEPKDWDPKLQRVWLDFSKLEKVVFQGNGVIDGSGSKWWAASCKKNKSNPCRGAPTALTIDSSSAIKVKGLTIQNSQQMHFTISRCDSVRISGVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGIVTKVILDTAVLRETTNGVRIKTWQGGSGYVRGVRFQNVRVENVSNPIIIDQFYCDSPTTCQTQTSAVEISEVMYQNISGTTMSAKAIKFDCSDTAPCSNLVLSNVDLEKQDGTVETYCHSAQGFGYGVVHPSADCLNSNDKNSQIEESTMEEDIRHTEL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0783 458 PANTHER BNAA08G20470D PROTEIN 2 444 - -
Apr3g0783 458 Gene3D - 55 457 IPR012334 -
Apr3g0783 458 SUPERFAMILY Pectin lyase-like 61 435 IPR011050 -
Apr3g0783 458 SMART pbh1 220 246 IPR006626 -
Apr3g0783 458 SMART pbh1 247 268 IPR006626 -
Apr3g0783 458 SMART pbh1 329 350 IPR006626 -
Apr3g0783 458 SMART pbh1 270 290 IPR006626 -
Apr3g0783 458 Pfam Glycosyl hydrolases family 28 97 417 IPR000743 GO:0004650|GO:0005975
Apr3g0783 458 MobiDBLite consensus disorder prediction 438 458 - -
Apr3g0783 458 PANTHER - 2 444 - -
Apr3g0783 458 ProSitePatterns Polygalacturonase active site. 277 290 IPR000743 GO:0004650|GO:0005975
Apr3g0783 458 MobiDBLite consensus disorder prediction 444 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0783 Apr-Chr3 20558643 20563718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0783 23 458 Glycoside Hydrolase AT1G23460 71.167 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0783 - - gmx:100804067 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0783 3 20558643 20563718 Apr3g0783 3 20558643 20563718 ECH