Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0782 ATGTGTGAGTCCAAGATTCTGGTTTCAACACTGAAACCATGGTGGTGGAAACAAAAGCCTCAACTACAGTCTTTTATCAGAGCCATAACAATTCCTACACCTACGCTAACAATGCCTTCACACGCGTCGCTTCCTCTTCACAATGCCACCAGCAACTATATCCTCATGAAGAACCGCGAAATCGATGTTTTCATAAAATCCAGGAACCTGAACGCTGCACTTGCAGTTTTCCATAACATGCCACTGCGTGACACTGTCACCTATAACCTGATGATTTCCGGGTTCTATAAACAACCCGAACATGCTCTTCATCTCTATGCTGAAATGGGTTTGCTTGGAATAAGAGAAAGCTCAACCACGTTCTCTTCTATTATAGCGGTTTGCACCAATAAAGAGTTTTTTAGAGAAGGTGTTCAGGTGCATTGTAGAGTGCTCAAGTTTGGATTTTTACGTAACGTGTACGTTTGTGGTGCACTTGTTGGGTTTTACATGCACGTGGGGCTCAGTGGGGTGGCACTGGAGTTGTTTGATGAGTTGCCAGAACGAAATTTGGGTGTTTGGAATGTGATGTTACGTGGATTATGTGAAATGGGTCGTGTTGAAGTGGAAGATTTGCTTGGATTTTACTCTCGGATGTGTTTTGAAGGTGTGGAGCCAAATGGAGTTACGTTTTGTTATTTGCTTAGGGGGTGTGGTAATCTGAGACTCTTGCATGAAGGGAAGAAGCTTCAAGGTTGCATTTTGAAGATGGGTTTGGTGGAATCGAACGTTCTCGTTGTTAATAATTTGGTGGATTTTTACTCTGCATGTGGGTGTTTGGTTGGTGCAAGGAAGTGTTTTGAAGACATAAAAGTTGAGGATGTTATTTCATGGAACTCGTTGGTTTCTGTTTATGCTGAGAATAATTTGTTGTTTGATGCTTTGGAGTTGTTTAGTGTTATGAAAGTGAGGGGGCACAGGCCATCCGTTCGTTCATTGGTGGGTTTGTTGAATTTGTGCAGTAGAATTGAAGAACTTTGTTTAGGGAAGCAGATGCATTGTCATGTTATGAAGATGGGTTTTGACGAAGGGAGTGTGCATGTTCAATCTGCTTTGATTGATATGTATGGAAAATGTAGGGACATTGAGAGTTCTGTGGCTGTGTTTGAATGCCTTCCCAAAAGAACTTTGGAGTGTTACAACTCATTGATGACCTCTTTGTCTCACTGTGGTGCCATTGAAGATGTGGTGGAATTATTTGGTTTAATGGTTGATGAAGGTTTCATGCCAGATGAAGTGACATTCTCCACCACAATTAAGGCTTTGTCTGCTTCAGCAAGCTTCACGAGCTCTCAGTTACTGCATTGTTATGCATTAAAATCTGGACTTGAAGGAGATGCTGCAGTTGCATGTTCCCTTATGGATGCATATTCAAGATGTGGGTATGTGGAACTTTCTCATAATATTTTTGAGACCCTTCCTTCTCCAAATGCTATTTGCTTCACGTCTATGATCAATGCATATGCCCGAACTGGGATGGGAAAAGAAGGAATTGCAGTGCTTCAAGCTATGATTGAGAAGGGTCTAAAACCAGATGAAGTTACCTTCTTATGTGCATTAACGGGGTGTAACCACACAGGACTAGTTAAGGAAGGAAGAATAGTCTTTGATTCAATGAAATCTCTTCATGGGGTTCATCCGGATCGCCGGCATTATTCATGCATGGTGGATCTTTTATGCCGTGCAGGACTTCTACATGAAGCTGAAGAGTTGCTGCTACAGGCAGCAGGAAAGAGAGACTGTTCTATGTGGAGCTCTTTGCTAAGAAGTTGCAGGGTCCATAAGAATGAAGAGGTTGGAACAAGAGCAGCACAAGTACTAATTGAGCTAGACCCAGATGATCCTGCAGTGTGGTTGCAAGCTTCAAATTTTTATGCTGAAATAGGGAAATTTGATGAGTCAAGGCAAATCAGAGAGGTTGCTCTAGCAAGGAAGATGACTAGGGAGATTGGTCGTAGTTTAATTGAGATAAGACAGTGA 2019 0.4215 MCESKILVSTLKPWWWKQKPQLQSFIRAITIPTPTLTMPSHASLPLHNATSNYILMKNREIDVFIKSRNLNAALAVFHNMPLRDTVTYNLMISGFYKQPEHALHLYAEMGLLGIRESSTTFSSIIAVCTNKEFFREGVQVHCRVLKFGFLRNVYVCGALVGFYMHVGLSGVALELFDELPERNLGVWNVMLRGLCEMGRVEVEDLLGFYSRMCFEGVEPNGVTFCYLLRGCGNLRLLHEGKKLQGCILKMGLVESNVLVVNNLVDFYSACGCLVGARKCFEDIKVEDVISWNSLVSVYAENNLLFDALELFSVMKVRGHRPSVRSLVGLLNLCSRIEELCLGKQMHCHVMKMGFDEGSVHVQSALIDMYGKCRDIESSVAVFECLPKRTLECYNSLMTSLSHCGAIEDVVELFGLMVDEGFMPDEVTFSTTIKALSASASFTSSQLLHCYALKSGLEGDAAVACSLMDAYSRCGYVELSHNIFETLPSPNAICFTSMINAYARTGMGKEGIAVLQAMIEKGLKPDEVTFLCALTGCNHTGLVKEGRIVFDSMKSLHGVHPDRRHYSCMVDLLCRAGLLHEAEELLLQAAGKRDCSMWSSLLRSCRVHKNEEVGTRAAQVLIELDPDDPAVWLQASNFYAEIGKFDESRQIREVALARKMTREIGRSLIEIRQ* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0782 672 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Apr3g0782 672 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Apr3g0782 672 TIGRFAM PPR: pentatricopeptide repeat domain 186 220 IPR002885 -
Apr3g0782 672 TIGRFAM PPR: pentatricopeptide repeat domain 492 526 IPR002885 -
Apr3g0782 672 Pfam PPR repeat 289 318 IPR002885 -
Apr3g0782 672 Pfam PPR repeat 363 387 IPR002885 -
Apr3g0782 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 596 IPR002885 -
Apr3g0782 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Apr3g0782 672 Gene3D Tetratricopeptide repeat domain 530 659 IPR011990 GO:0005515
Apr3g0782 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Apr3g0782 672 PANTHER - 24 666 - -
Apr3g0782 672 PANTHER OS01G0913400 PROTEIN-RELATED 24 666 - -
Apr3g0782 672 Pfam PPR repeat family 184 231 IPR002885 -
Apr3g0782 672 Pfam PPR repeat family 489 536 IPR002885 -
Apr3g0782 672 Pfam PPR repeat family 392 435 IPR002885 -
Apr3g0782 672 SUPERFAMILY TPR-like 565 658 IPR011990 GO:0005515
Apr3g0782 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 219 IPR002885 -
Apr3g0782 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Apr3g0782 672 Gene3D Tetratricopeptide repeat domain 203 360 IPR011990 GO:0005515
Apr3g0782 672 Gene3D Tetratricopeptide repeat domain 56 202 IPR011990 GO:0005515
Apr3g0782 672 Gene3D Tetratricopeptide repeat domain 361 514 IPR011990 GO:0005515
Apr3g0782 672 Pfam PPR repeat 557 585 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0782 Apr-Chr3 20556001 20558019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0782 22 670 Glycoside Hydrolase AT3G49170 30.560 4.50e-91 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0782 - - gmx:102669506 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0782 3 20556001 20558019 Apr3g0782 3 20556001 20558019 ECH