Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0780 ATGATTATTCCCGTTCGTTGCTTCACATGTGGGAAGGTCATTGGAAACAAATGGGATACCTATCTCGACCTTCTCCAAGCCGATTACCCTGAAGGAGATGCACTGGATGCTTTGGGGTTGGTTCGTTATTGCTGCAGGCGCATGCTTATGACCCATGTTGACCTCATTGAGAAGCTTCTGAATTACAACACTTTGGACAAGTCTGATCCCAGTTAA 216 0.4583 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPS* 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0780 71 Pfam RNA polymerases N / 8 kDa subunit 2 59 IPR000268 GO:0003677|GO:0003899|GO:0006351
Apr3g0780 71 ProSitePatterns RNA polymerases N / 8 Kd subunits signature. 2 11 IPR020789 GO:0003677|GO:0003899|GO:0006351|GO:0008270
Apr3g0780 71 SUPERFAMILY RNA polymerase subunit RPB10 1 63 IPR023580 -
Apr3g0780 71 Hamap DNA-directed RNA polymerase subunit Rpo10 [rpo10]. 2 56 IPR000268 GO:0003677|GO:0003899|GO:0006351
Apr3g0780 71 Gene3D - 1 69 - -
Apr3g0780 71 PANTHER - 1 71 - -
Apr3g0780 71 PIRSF RpoN_RPB10 1 70 IPR000268 GO:0003677|GO:0003899|GO:0006351
Apr3g0780 71 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER 1 71 IPR000268 GO:0003677|GO:0003899|GO:0006351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0780 K03007 - cit:102624903 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0780 3 20533879 20535535 Apr3g0780 3 20533879 20535535 ECH