Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0777 ATGGTAATAGTCGCATTATCATCCTCCCTCCCTGGTGGCAGAAACCTCTTCTCCTCCTTGCCCTCAACCCCGCCGCCACACGACCCCACCGCCGCCGCCATCTCCGCCACTCCGCCGCCACCAATCTCAATACCCAAGTACCCCCCTCCCCGCAAATCCCAAAACCCTCCACAACCCCAAAACCCTCCACCAAACCCTGGCCTCAAATACCACCGCCACTCCAAGTACCACAAGCCCGTCAAGCACGGCGGCGTCATCGCCTCCGAAGGCGACCGCTCAGTCATAATTGGCGACTCCGGCGTGTCGTACCTGCTCCCCGGCGCCCCCTTTGAGTTCCAATTCAGCTACTCGGAGACGCCGAAGGCGAAGCCGCTGGCGATTCGCGAGCCGGCGTTCCTGCCTTTCGCGCCGCCCACGATGCCGAGGCCGTGGACGGGGAAGGCGCCGTTGAAGAGTAAGAAGGAGAAGAAGAAGATTCCACTGTTTGATTCGTTCAACCCTCCCCCTCCCAACACGAAGGGAGTGAAGCGTGTAGAAATGCCTGGACCGTTTCCGATGGGGAAGTATCCGAAGGAGGGTAAAACGAGGGAAGAGATTCTTGGGGAGCCTCTCAAGAAGTGGGAGATACAAATGCTTATTAAGCCCATGTTATCTCATAATCGCCAGGTTAATCTTGGAAGGGATGGATTGACGCATAACATGTTGGAGTTGATACATTCGCATTGGAAGCGACGCCGTGTTTGTAAAATTCGCTGTAAAGGTGTTCCAACTGTAGATATGGATAATGTTTGCCATCATATAGAGGAGAAAACTGGGGGGAAAATTATTCATCGAGTTGGTGGTGCAGTTTATCTTTTCCGTGGTAGAAATTACAACTATAGTACTCGTCCTCAGTTTCCTATTATGCTCTGGAAGCCAGCTGCTCCTGTATACCCAAAACTTATTCAGGATGCTCCAGGAGGATTAACAAAAGCTGAAGCTGATGAGTTAAAGATGAAGGGGAAAAGCCTGCTGCCAATATGTAAATTAGCCAAAAATGGAGTATACACCTCCCTTGTAAAGGATGTGAGAGATGCTTTTGAAGGATGTCCTCTAGTGAAAATTGACTGCAAGGGGTTGGATCCTAGTGATTACAAGAAATTAGGTGCCAAACTTAAGGATTTGGTTCCTTGTGTGCTGTTGTCTTTTGATGATGAACAGATATTGATGTGGAGGGGCAAAGACTGGAAATCGAGGTACCCACAAGTTCTGCCCATTTGTACTCCTGCCGAAGCTGGTGTTACAGGAAAATTGAACAACAATACAGGCAACGAGACTGACGACAGTCAAACTGTGGAGCACGATGGCAACATGGTGAACACAAGCTCAAAAATGTTGTCTCTGTGGAATACTGCAATTGAGTCAAGCAAGGCTTTGTTGCTAGATGATTTTAATCTTGGTCCTGATGCTCTTTTGGAGAAGGTAGAGGAATTCGAGGCTGTTTCACAGGCCACGGAGCACTCCCATCCAGCATTTATTTTGTCTGGTGAAAATGGTGCTGAAGGTTCAACCACAAACTTCGAAGATAGCTATTCTAGTGACGGCTTACCTACTGAGTATGATGACGATGATGATTATGTTAACTACCATGATGATGAAGATGATGACTTGTATGTCGTGGACTCATCAGCTCAACCCGGATCATTACCCCTGGATATGATTGTCAAAAGGCTAAACCAAGACCACAGGAGTAAAAACATGAAAAAAAATCTATGA 1755 0.4832 MVIVALSSSLPGGRNLFSSLPSTPPPHDPTAAAISATPPPPISIPKYPPPRKSQNPPQPQNPPPNPGLKYHRHSKYHKPVKHGGVIASEGDRSVIIGDSGVSYLLPGAPFEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPLKSKKEKKKIPLFDSFNPPPPNTKGVKRVEMPGPFPMGKYPKEGKTREEILGEPLKKWEIQMLIKPMLSHNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCKGVPTVDMDNVCHHIEEKTGGKIIHRVGGAVYLFRGRNYNYSTRPQFPIMLWKPAAPVYPKLIQDAPGGLTKAEADELKMKGKSLLPICKLAKNGVYTSLVKDVRDAFEGCPLVKIDCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGKDWKSRYPQVLPICTPAEAGVTGKLNNNTGNETDDSQTVEHDGNMVNTSSKMLSLWNTAIESSKALLLDDFNLGPDALLEKVEEFEAVSQATEHSHPAFILSGENGAEGSTTNFEDSYSSDGLPTEYDDDDDYVNYHDDEDDDLYVVDSSAQPGSLPLDMIVKRLNQDHRSKNMKKNL* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0777 584 ProSiteProfiles CRM domain profile. 202 298 IPR001890 GO:0003723
Apr3g0777 584 Gene3D - 203 298 IPR035920 -
Apr3g0777 584 Pfam CRS1 / YhbY (CRM) domain 322 405 IPR001890 GO:0003723
Apr3g0777 584 Pfam CRS1 / YhbY (CRM) domain 206 287 IPR001890 GO:0003723
Apr3g0777 584 SUPERFAMILY YhbY-like 203 296 IPR035920 -
Apr3g0777 584 MobiDBLite consensus disorder prediction 22 66 - -
Apr3g0777 584 Gene3D - 322 416 IPR035920 -
Apr3g0777 584 MobiDBLite consensus disorder prediction 506 532 - -
Apr3g0777 584 MobiDBLite consensus disorder prediction 160 191 - -
Apr3g0777 584 MobiDBLite consensus disorder prediction 428 450 - -
Apr3g0777 584 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 10 573 - -
Apr3g0777 584 MobiDBLite consensus disorder prediction 13 72 - -
Apr3g0777 584 SUPERFAMILY YhbY-like 322 413 IPR035920 -
Apr3g0777 584 SMART CRS1_YhbY_2 204 287 IPR001890 GO:0003723
Apr3g0777 584 SMART CRS1_YhbY_2 322 405 IPR001890 GO:0003723
Apr3g0777 584 MobiDBLite consensus disorder prediction 511 526 - -
Apr3g0777 584 ProSiteProfiles CRM domain profile. 320 416 IPR001890 GO:0003723
Apr3g0777 584 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 10 573 IPR044599 GO:0000373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0777 Apr-Chr3 20482134 20498094 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0777 - - gmx:100801953 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0777 3 20482134 20498094 Apr3g0777 3 20482134 20498094 ECH