Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0493 ATGCAACCCAGTCAAATCTGCAGCAATATCATCATCCCGAGATCGCCGCCCGAAGCACTACGCATTAAATCCAAATCCAAATCTAAGAGCAAATCCAAACCCAAACCCAAACCCTTAGCCCTCACCCTATACAAAAATGCATTCAATTCCCAACCCCTTCCCTTGAACATGCACTTCCCTGCCCCGAGAAGGTCCACCACTACGCTTCCCAATCGCGCTGTCAAAATGCGACCCCCGAAACGGCTTCGCATGCCACATGCGGAGGATCTCCGCCGCTCTCCTAGGTTGAATTCTGCTCTGGCCACTGTTGGAAGTGGCAATGCGGGTTCTAGAGAGAGAGAGAAAGCTCGGACACCGTCCTCGACGAGTTGTTCGGGTTATCTTGTAAAGCGGCAAAGGTCTAGGGGTCCAGAATTACCATTGAATGCTGACCTGAAGGACCAAAAAACATTTTTGGATGGGAAATGCTTTCAGGAAAAGAGCTTTCGGAGATCCCCGAGACTGGCATCAACTCATTTTGAATGTGAAAGAATCTGTCAAAAGACATCACCACAGACGATGTTGGTGTCCCTTGCAGAGGACAACCATGGAGTTTCATTAAGCAATGAATCCAATATTCATTCATATGCCAAGCCAGGTCATCTTTCCTTTCAAATGGAAACCAAACATTTCAATAATTCTGATGGGAAGTTCGTTGGTGAGAAGCACTTGAGAAAGTCCCCAAGAAAGTTCTTTGGTGTGAAACTGTACAGTTCTCTGGGGGTTAGGAGATCTCCAAGACTTTCATCTTCCAGTGGAAGTAAAAACATGGAAATTAATGCTCTTCAAGAAAAAAGAATGTCAAAAGTAGTTCACCAAAAGAAAACAAATACAAAAATGATTTCTATTTCCATTGAATTGTCTAATTCACCAGTTGAGCAGCATTCCAAGGTTAAAACCATCTCAAGAAGCTCTACCCCTAGAGTTCATGATACAAAACGCTTGAGCTGCTCTTCAGAGGCAAACACATCCTCATCCTGGGTTGAAAATGGCAGAATAACATGTAATTCCTCTGCGTTGTTGCCTGAGTTAGATGACAAGCCGCCAAGAAAGAAAAATAGAACATCTATTTCTTCAACAAAGGAACTTATGAATTCAGAATGCAATCCTTCCTTTGTTGGTGATCCTATACCTGATGATGAAGCTCAAAAAAGATGGGGATGGCGTTATGATTTAAAGGACAAAAAATTTAGAGATAAAAAGTTCAAAGTAAACGAGGGTGAAGAAGATGAGATTATTGTAAATGTCAAATGCCATTATGCACAAGCTGAAATTGAGAATTGCATTTTTAGTCTTGGCGATTGTGCATTTATAAAAGGTGAAGGAGGGAAAAATCACGTTGGAAAGATTATTGAATTTTTCCAAACAACTGATGGTCGAAATTATTTCCGAGTCCAGTGGTTTTATAGAATTCAAGATACAGTTGTCCAAGACGAAGGTGGTTTCCATGACAAGAGGCGTTTATTCTATTCATCAATAATGAATGATAACTTAATAGATAGCATAATAGGAAAAGCTAATGTTACACAAATAATGCCTAGGGTTGGTCTGAAGTTGGCTTCAGTTTTACCATCTGACTTCTATTATGATATGGAGTATTCTGTGGATTACTCTACATTCCACAATATACCAACAGAGGCCTCTACAATAATTGAGAGTCTACCCTGTTCTGAGTTGCACAAGACAGAATTAGAATTACTAGATCTCTATTCTGGCTGTGGTGGCATGTCAACTGGATTGTGCTTAGGTGCCAAAACTTCATCAGTTAACCTTGTGACGAGATGGGCTGTTGATAGTGATAGGTCTGCTAGTGAAAGCTTGAAACTAAACCATCCAGATACATATGTGCGAAATGAATCTGCTGAGGACTTTCTGGAACTATTGAAGGAGTGGGGAAAACTATGCAAACGGTATAATGCTGATAATGCAGAAAGATCACTTCCATTACGATCAAATAGTTCAGGAGCAAAGAAACAAGTGAATTCTGAATCTTGTCATGAGCTTGCTGGTGAATTTGAAGTTTCTAGGTTAGTCGATATTTGCTATGGTGATCCCAATGAAACTGGGAAACGTGATCTACATTTGAAGGTGCATTGGAAAGGTTACGGTGCAAGTGAAGACACATGGGAACCAATTAAAAGCTTAAGCAAATGTACGGAAAGCATACAGGATTTTGTGAGAAAAGGAATGGAATCAAAGATCTTGCCTCTTCCAGGTGAAGTTGATGTTATTTGTGGGGGACCACCTTGTCAAGGAATTAGTGGATATAATCGCTATAGAAACTCTGCATCACCATTGGATGATGAAAGGAATCGGCAGATTGTGATTTTCATGGACATAGTGAAATTTTTGAAGCCTAAGTATGTTTTAATGGAGAATGTCGTTGACATACTGAGATTTGACAAAGGTTCGCTTGGGAGATATGCATTAAGTCGTTTGGTACATATCAATTACCAAGCAAGACTAGGAATTGTTGCTGCTGGGTGTTATGGTCTACCCCAATTTCGGTTGCGTGTTTTCTTGTGGGGTGCTCATCCCAGTGAGGTTCTACCCCAATTTCCACTGCCAACACATGACGTTATTGTTAGATACTGGCCTCCACCGGAGTTTGAGCGCAATATTGTTGCATATGATGAAGATCAACCTCGTGAACTAGAGAAAGCTACTGTCGTTCAAGATGCCATCTCTGATCTTCCTGCTGTCGAAAACTCTGAAACTCGTGAAGAAATGCCATATCAAAATCCTCCAGAAACAGAATTTCAAAGATATATACGGTCAACTAAGTATGAGATGATTGGATCAACATTAAATGGAACAAAAGAGAAAAGGCCTTTATTGTATGATCACCGACCCTACCCTTTGTTTGAAGATGACTACCTACGTGTTTGTAAAATCCCAAAACGCAAGGGTGCAAATTTTCGTGATTTGCCTGGTATAGTTGTAGGACCTGACAATGTGGTTAGGCGGCATCCAACAGAAAATCCTTTATTACCATCTGGAAAGCCATTGGTCCCAGATTATTGTTTCACTTATGAGCACGGGAAGTCTAAGAGGCCATTTGCACGGTTGTGGTGGGATGAGAATGTTCCTACTGCACTAACCTTCCCAAGTTGTCATAACCAGGTTATACTACATCCAGAGCAGGATCGAATCCTCACTGTACGAGAATATGCCCGGTTGCAAGGATTTCCTGATTATTATCAATTCTGTGGGACTGTGAAAGAGAGGTACTGTCAAATTGGAAATGCTGTTGCTGTTCCTGTTGCACGGGCTTTAGGTTATGCCTTTGGACTTGCATATAGAAAGCTCAGTGGAAATGACTCACTTGTGACCCTCCCGCCCAAGTTCTCTCACTCCAATCATTTTCAGTTATCTAATAATCAGCCTGGCAACACTGAATAG 3441 0.4124 MQPSQICSNIIIPRSPPEALRIKSKSKSKSKSKPKPKPLALTLYKNAFNSQPLPLNMHFPAPRRSTTTLPNRAVKMRPPKRLRMPHAEDLRRSPRLNSALATVGSGNAGSREREKARTPSSTSCSGYLVKRQRSRGPELPLNADLKDQKTFLDGKCFQEKSFRRSPRLASTHFECERICQKTSPQTMLVSLAEDNHGVSLSNESNIHSYAKPGHLSFQMETKHFNNSDGKFVGEKHLRKSPRKFFGVKLYSSLGVRRSPRLSSSSGSKNMEINALQEKRMSKVVHQKKTNTKMISISIELSNSPVEQHSKVKTISRSSTPRVHDTKRLSCSSEANTSSSWVENGRITCNSSALLPELDDKPPRKKNRTSISSTKELMNSECNPSFVGDPIPDDEAQKRWGWRYDLKDKKFRDKKFKVNEGEEDEIIVNVKCHYAQAEIENCIFSLGDCAFIKGEGGKNHVGKIIEFFQTTDGRNYFRVQWFYRIQDTVVQDEGGFHDKRRLFYSSIMNDNLIDSIIGKANVTQIMPRVGLKLASVLPSDFYYDMEYSVDYSTFHNIPTEASTIIESLPCSELHKTELELLDLYSGCGGMSTGLCLGAKTSSVNLVTRWAVDSDRSASESLKLNHPDTYVRNESAEDFLELLKEWGKLCKRYNADNAERSLPLRSNSSGAKKQVNSESCHELAGEFEVSRLVDICYGDPNETGKRDLHLKVHWKGYGASEDTWEPIKSLSKCTESIQDFVRKGMESKILPLPGEVDVICGGPPCQGISGYNRYRNSASPLDDERNRQIVIFMDIVKFLKPKYVLMENVVDILRFDKGSLGRYALSRLVHINYQARLGIVAAGCYGLPQFRLRVFLWGAHPSEVLPQFPLPTHDVIVRYWPPPEFERNIVAYDEDQPRELEKATVVQDAISDLPAVENSETREEMPYQNPPETEFQRYIRSTKYEMIGSTLNGTKEKRPLLYDHRPYPLFEDDYLRVCKIPKRKGANFRDLPGIVVGPDNVVRRHPTENPLLPSGKPLVPDYCFTYEHGKSKRPFARLWWDENVPTALTFPSCHNQVILHPEQDRILTVREYARLQGFPDYYQFCGTVKERYCQIGNAVAVPVARALGYAFGLAYRKLSGNDSLVTLPPKFSHSNHFQLSNNQPGNTE* 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0493 1146 ProSitePatterns C-5 cytosine-specific DNA methylases active site. 755 767 IPR018117 -
Apr3g0493 1146 SUPERFAMILY Chromo domain-like 680 745 IPR016197 -
Apr3g0493 1146 MobiDBLite consensus disorder prediction 307 334 - -
Apr3g0493 1146 ProSiteProfiles Chromo and chromo shadow domain profile. 685 741 IPR000953 -
Apr3g0493 1146 TIGRFAM dcm: DNA (cytosine-5-)-methyltransferase 753 1105 IPR001525 GO:0008168
Apr3g0493 1146 MobiDBLite consensus disorder prediction 353 374 - -
Apr3g0493 1146 Gene3D DNA Methylase, subunit A, domain 2 903 1075 - -
Apr3g0493 1146 MobiDBLite consensus disorder prediction 77 141 - -
Apr3g0493 1146 PANTHER DNA (CYTOSINE-5)-METHYLTRANSFERASE CMT2 204 1140 - -
Apr3g0493 1146 ProSiteProfiles C-5 cytosine-specific DNA methylase (Dnmt) domain profile. 577 1116 IPR001525 GO:0008168
Apr3g0493 1146 ProSiteProfiles BAH domain profile. 441 557 IPR001025 GO:0003682
Apr3g0493 1146 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 577 1108 IPR029063 -
Apr3g0493 1146 SMART BAH_4 441 557 IPR001025 GO:0003682
Apr3g0493 1146 Pfam C-5 cytosine-specific DNA methylase 745 1107 IPR001525 GO:0008168
Apr3g0493 1146 Pfam Chromo (CHRromatin Organisation MOdifier) domain 685 740 IPR023780 -
Apr3g0493 1146 PRINTS Cytosine-specific DNA methyltransferase signature 578 594 IPR001525 GO:0008168
Apr3g0493 1146 PRINTS Cytosine-specific DNA methyltransferase signature 798 812 IPR001525 GO:0008168
Apr3g0493 1146 PRINTS Cytosine-specific DNA methyltransferase signature 844 857 IPR001525 GO:0008168
Apr3g0493 1146 Gene3D - 378 542 IPR043151 -
Apr3g0493 1146 SMART chromo_7 684 743 IPR000953 -
Apr3g0493 1146 CDD CD_CMT3_like 684 740 - -
Apr3g0493 1146 PANTHER CYTOSINE-SPECIFIC METHYLTRANSFERASE 204 1140 - -
Apr3g0493 1146 MobiDBLite consensus disorder prediction 13 39 - -
Apr3g0493 1146 Pfam BAH domain 446 556 IPR001025 GO:0003682
Apr3g0493 1146 Gene3D Vaccinia Virus protein VP39 579 1126 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0493 Apr-Chr3 10235532 10255307 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0493 K00558 - gmx:100818307 1561.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0493 3 10235532 10255307 Apr3g0493 3 10235532 10255307 ECH