Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0465 ATGGAGGCAGTGGCCGAAAACCCCAATAGGACAAAGCCACTGAAGAACCCTAACAAACAACAACCAACCCAAATTCCCAAACCGCACCAACCGAACCAATTCCCCTCCCACTTGGACACCGCGAACGTGTCCTCCACAGCACGAACCCTGTGCGACATCCTAACCCGAACCTCTCCTCAGGACATCGAAGCCGCACTCTCCTCCTCGGGTATCCACCCTTCGGATGAGTGCGTCCATGAGGTCCTGAGGCTCTCTTACAATTACCCATCTTCGGCCCTCAAGTTCTTTCGCTGGGTCGGGCGCGTCAAAAAACAGCACACGCCCCACGCGTGGAACTTGATGGTCGATTTGCTGGGTAAAAACCAGCTTTTCGAGCCCATGTGGGACGCCGTTAGGTCCATGAAACAGGAAGCCACGCTTTCTCTCTCCACTTTCGCTTCCATTTTCCAGAGTTACTGCACCGCCGGAAGGTTTAACGAGGCCGTTATGAGCTTCGACGTCATGGACAGGTACGGCGTTAAGCAGGACGTGGTCGCCGTTAACTCACTCCTCAGCGCAATTTGCAGCGAGGAGAATCAAACCTCCGTTGGTCTCGAATTCTTCGAAAGGATCAAAGCGAAGGTTGCACCCGACGGTGACACCTTCGCGATTTTGCTCGAAGGATGGGAGAAGGAAGGGAATGCGGCGAAGGCGAAGACCACGTTTGGGGAAATGGTAATTCGTGTTGGTTGGAGCAAGGAGAATGTGCCTGCTTATGATGCTTTCTTGATGACTCTCGTACGCGCCGCCCAGATGGATGAGGTTGTTAGGTTCCTTCAGGTTATGAAGGACCATGACTGCATTCCAGGTTTGAAATTCTTTACCAATGCTCTTGATATTTTTGTGAAGCAAAACGACGCCGTTCACGCCATTCCCGTGTGGGAAGCGGTGGTGGGGGGTGGATTAGTGCCTAATTTCATAATGTGCAATGCCATGATTGGGTTGCTTTGCAACAATGGCGAGATTGATCGCGCGTTCAGGCTGCTTGATGAGATGGTTTTGCTTGGTGCGTTTCCTGACTCGTTGACTTACAACATGGTTTTTGAGTGCTTGGTGAAGAACAAAAAGGTCCGTGAGACCGAAAGGTTCTTCACCGAGATGGTCAAGAACGAGTGGCCGCCCACTGGCGCTAACTGTGCTGCGGCCATTGCAATGTTGTTTGATTGTGATGACCCTGAAACTGCCCTTGAGATTTGGAGTTGTGCGGTAGAAAATCATGTCAAGCCACTTGATGGGAGTGCGAATGCGTTGCTCATTGGGCTTTGTAACTTGAGCCGATTCACAGAGGTGAAAAGGTTTGCTGAGGATATGCTCGATAGGAGGATTAAAATATATGAATCTACAATGATCACATTGAAGGATGCCTTCTATAAAGAAGGTAGAAGTGCAAGTGACAGATATGATAGTCTTTGTAGAAGGTGGAAAGATCATGTCAAGTTGTAA 1482 0.5 MEAVAENPNRTKPLKNPNKQQPTQIPKPHQPNQFPSHLDTANVSSTARTLCDILTRTSPQDIEAALSSSGIHPSDECVHEVLRLSYNYPSSALKFFRWVGRVKKQHTPHAWNLMVDLLGKNQLFEPMWDAVRSMKQEATLSLSTFASIFQSYCTAGRFNEAVMSFDVMDRYGVKQDVVAVNSLLSAICSEENQTSVGLEFFERIKAKVAPDGDTFAILLEGWEKEGNAAKAKTTFGEMVIRVGWSKENVPAYDAFLMTLVRAAQMDEVVRFLQVMKDHDCIPGLKFFTNALDIFVKQNDAVHAIPVWEAVVGGGLVPNFIMCNAMIGLLCNNGEIDRAFRLLDEMVLLGAFPDSLTYNMVFECLVKNKKVRETERFFTEMVKNEWPPTGANCAAAIAMLFDCDDPETALEIWSCAVENHVKPLDGSANALLIGLCNLSRFTEVKRFAEDMLDRRIKIYESTMITLKDAFYKEGRSASDRYDSLCRRWKDHVKL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0465 493 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 24 490 - -
Apr3g0465 493 Pfam PPR repeat family 317 366 IPR002885 -
Apr3g0465 493 TIGRFAM PPR: pentatricopeptide repeat domain 356 388 IPR002885 -
Apr3g0465 493 TIGRFAM PPR: pentatricopeptide repeat domain 321 353 IPR002885 -
Apr3g0465 493 Gene3D Tetratricopeptide repeat domain 62 241 IPR011990 GO:0005515
Apr3g0465 493 Gene3D Tetratricopeptide repeat domain 285 492 IPR011990 GO:0005515
Apr3g0465 493 MobiDBLite consensus disorder prediction 1 36 - -
Apr3g0465 493 MobiDBLite consensus disorder prediction 11 36 - -
Apr3g0465 493 Pfam Pentatricopeptide repeat domain 166 219 IPR002885 -
Apr3g0465 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Apr3g0465 493 PANTHER OSJNBA0019D11.15 PROTEIN 24 490 - -
Apr3g0465 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Apr3g0465 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Apr3g0465 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0465 Apr-Chr3 9693978 9696048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0465 141 486 Glycosyltransferase AT1G05670 21.907 4.94e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0465 - - gmx:100796114 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0465 3 9693978 9696048 Apr3g0465 3 9693978 9696048 ECH