Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0415 ATGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGAGCAGGCAACTTTCAACCTTATGGATATTCTGGTGGCTTCCAGCCCCCTCCTCCCTTTCCTGTGGTTCGCCTCAGGGGGCTTCCATTCAACTGCACCGATATTGACATTCTGAAGTTCTTTGCTGGCTTGACCATTGTGGATGTGTTGCTGGTCAACAAAAGTGGACGGTTCTCGGGGGAGGCCTTTGTAGTCTTTGCAGGCGCAATGCAGGTTGAGTTTGCTTTGCAGAGAGATCGACAGAACATGGGTCGCAGATATGTGGAAGTTTTCAGGTGTAAGAAGCAGGACTATTACAATGCTGTTGCTGCTGAGATCAATTATGAAGGAATATATGATAATGATTACCATGGTAGCCCTCCTCCTTCTCGGTCCAAGAGGTTTAGTGATAAAGACCAAATGGAATACACTGAGATATTGAAGATGCGTGGACTTCCGTTTGCAGTGACAAAATCTCAAATTGTTGAATTCTTTAAAGATTTCAAGCTGATAGAAGATAGGGTACACATTGCATGTCGCCCTGATGGAAAAGCTACTGGAGAGGCATATGTGGAGTTTGTTTCTGCTGAGGAGGCTAAGGGAGCAATGTCCAAGGATAAAATGACCATTGGATCAAGGTATGTGGAGCTGTTTCCTTCTACACCAGATGAAGCTAGACGGGCAGAGTCAAGATCAAGGCAGTAA 783 0.4649 MAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGAGNFQPYGYSGGFQPPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAAEINYEGIYDNDYHGSPPPSRSKRFSDKDQMEYTEILKMRGLPFAVTKSQIVEFFKDFKLIEDRVHIACRPDGKATGEAYVEFVSAEEAKGAMSKDKMTIGSRYVELFPSTPDEARRAESRSRQ* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0415 260 CDD RRM_hnRNPH_ESRPs_RBM12_like 172 244 - -
Apr3g0415 260 SUPERFAMILY RNA-binding domain, RBD 42 133 IPR035979 GO:0003676
Apr3g0415 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 248 IPR000504 GO:0003723
Apr3g0415 260 SMART rrm1_1 172 244 IPR000504 GO:0003723
Apr3g0415 260 SMART rrm1_1 55 124 IPR000504 GO:0003723
Apr3g0415 260 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 4 260 - -
Apr3g0415 260 Gene3D - 155 260 IPR012677 -
Apr3g0415 260 Gene3D - 54 137 IPR012677 -
Apr3g0415 260 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 4 260 - -
Apr3g0415 260 SUPERFAMILY RNA-binding domain, RBD 170 257 IPR035979 GO:0003676
Apr3g0415 260 CDD RRM_hnRNPH_ESRPs_RBM12_like 55 124 - -
Apr3g0415 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 119 IPR000504 GO:0003723
Apr3g0415 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 241 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0415 Apr-Chr3 8079521 8120811 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0415 K12898 - gmx:100816391 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0415 3 8079521 8120811 Apr3g0415 3 8079521 8120811 ECH