Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0407 ATGGCTCGAAGATCCTTACCGCTCCTCAAGCACCTCCTCTCGCGATCTGAACCCAACCCAGTCCGCCCCACGTTCCCGACCCGATCCGTGACCTACATGCACCGCCCAGGCGACGGGTACCCACGGCCGGTGACGATGATTCCAGGCGACGGAATAGGGCCACTGGTAACCGGGGCGGTGGAGCAGGTGATGGAGGCGATGCACGCGCCGGTGTACTTCGAGAAGTTTGAGGTCCATGGGGAGATGAAGGTGGTGCCTCAGGAAGTGATCGATTCGATTCGTAAAAACAAGGTGTGTTTGAAGGGTGGACTTGTTACTCCTATGGGTGGTGGCGTTAGTTCCCTGAACGTGCAGTTGAGGAAGGAGCTTGATCTCTACGCGTCTCTCGTTAATTGCTTCAATCTCCCTGGCTTGCCCACGCGCCACGACAACGTTGACATTGTCGTTATTAGGGAGAACACCGAAGGCGAGTACTCTGGCCTCGAACACGAGGTCGTTCCTGGCGTCGTTGAAAGCCTCAAGTTCTGTTCAGAGCGTATTGCTAAATATGCATTCGAATATGCTTACTTGAATAACAGAAAGAAGGTGACTGCCGTGCACAAAGCAAATATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGTGAGGTTGCCACAAAGTACCCTGGAATAAAGTATAACGAAATTATTGTGGATAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAACAGTTTGATGTCATGGTGACCCCAAATCTTTATGGAAATCTGGTTGCAAATACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCTGGAGGTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGAAGTGATAAAATAGTGGAACAAAAGACGGCCAATCCGGTGGCGCTTCTTCTCTCGTCTGCTATGATGCTTAGGCATCTCCAGTTTCCTGCATTTGCTGATCGTTTGGAAAATGCTGTGGAACAAGTCATTCTGGAGGGCAAATACAGGACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAAGTTGTGGATGCAGTGATAGATGCTTTAGATTGA 1104 0.5027 MARRSLPLLKHLLSRSEPNPVRPTFPTRSVTYMHRPGDGYPRPVTMIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFEVHGEMKVVPQEVIDSIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGSDKIVEQKTANPVALLLSSAMMLRHLQFPAFADRLENAVEQVILEGKYRTKDLGGTSTTQEVVDAVIDALD* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0407 367 SMART Iso_dh_2 43 362 IPR024084 -
Apr3g0407 367 Pfam Isocitrate/isopropylmalate dehydrogenase 44 362 IPR024084 -
Apr3g0407 367 Gene3D Isopropylmalate Dehydrogenase 29 366 - -
Apr3g0407 367 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 41 366 - -
Apr3g0407 367 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 1 364 - -
Apr3g0407 367 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 42 365 IPR004434 GO:0006099
Apr3g0407 367 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 1 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0407 Apr-Chr3 7906259 7911635 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0407 K00030 - gmx:100777867 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0407 3 7906259 7911635 Apr3g0407 3 7906259 7911635 ECH