LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g0318	ATGGACCCTGTGGAGGTCCTCCCTCCATGGGTTCCCGAAGACGACCTTCTCTTGAAGAACGCCGTCGAGGCCGGTGCTTCGTTGGAATCGCTGGCCAAAGGAGCGGTTCGGTTCTCACGACGCTATTCCGTTACGGAATTGCGAGATCGGTGGCGCTCTCTGCTCTACGACGCTGACGTTTCTGTTACCGCTTCCGCTTCCATGGCGATTTTGGAGCTCGCCAAGTTGAGCGGAAGCGGAAGCGGAAGCAAGGAGGGTTCGGGAGAAGGTAGAAAGAGGAAAGTTCAAAGCATTCGGAAGCAGTACTACGCGATGCGGAAAAGGCATGGCAGGTGCAGGGAGGGCGTGAATGTTGAAAAGAACGCGGTGGTGTGTGACGGAAATGGAAGTGTGGTGGTTGATGGTAATTTAAATGATGATGTGAATAATTTAGTTAATTATGGGGATTACTCGGGGTTAGAGGGAGTAGGAGTAGGGCAATCTAATTCGATAAGTGATGTTCCTTTGTGGAAAACTATAGAGGATGTTTCTGTGCCTGATATGCCTGTTCAAGTTAATGTGCTTGAAAGTGAAAATCGTTGTTCTGAAGGGAGAGAAATAGTTTCCCATGGTTTGAGTTTGGAAGGTAAGTGTGAGAATGGTGGGGTGAATGCTCCTGATGCTGTGTTGGGAGACGATGCTGTGCGTATTTCTGATTCTCTCTTGGACTTGACTGGGGATGAACTTATTTATGTGGATATAGATGGGAAAGATGCGACAGCTGCGGATAAGCCGTGTTATGATAATGTTGATTCGCTGTTGTTAAGTTCTCCTTGTGATGTTCAGGGTAATCATGTTGCTGGTGTTTGTGAGCCACAGAAGTTGGATGCGGAAACTAAATTTGCTGTGCGTTCTGGGTCATCTTCCACCGTGTTGGAGGGTGTTGCTAGCTCGTTAGGCAGCAGTCGTGGTGATCAACATTTTGTTTCTGATTCTGGAAATGATGTTGGATCGTCTGTGGCAGCACAAAGTTCTCACCCGGAACTTCGTGAGGACAATATGTTCTGCGTATTGAATACTGAGGACCCTGTGGTCCCATGCAATGACCATATAACTTTATCCATTTTAGTTCCTCATTCAGTTGCCCTGAAATCCCGACCAATTGTTAAAGAGGTGGGTTATTCAGAATCGGTTATGAATAATCAACGAAGAAATGAACTGGTTGGAAGCTTGAATAAAGAAGACGTTCTTTCTCACTCTTTTGCAGCTTCACAGACAGTTCGACAGGGGTTACTGTCTAATATAAATTCAAGCTACCCACCTGTTGATCTTGTACCTAAATCTGAAAATCCTGGAAGAAACTCTATTTCTGCAGTTTCTAGACAGAGTAACAATGTCAATGTCAACATCAACCCAAGTCATAGCAGATTAGTTAGTGCAACTGTGATGCCTGCCTCAGATAGACATCTAAAACAAGAGGAAATTGTTGCTCTGACTTCTGCTGAAGTTTATGCACATACAAAGGTTGAGGAACATAAGGTTTTACCTAAATCAGAAGCAAAATCATTCTCTCTCGATCAGGAAGAAGGTGATGTTGATGATGATGATGACGATGATGAAATTCCTGACTTTTCTGATGCTGAGGCAATGATTCTTGAAATGGATTTATGTCCAACTGATCAAGATACAAATGCAAGTAGAGAAGTCTTGAGATATCAACATGAAGAAACTAAGAGGACTATCATGAGATTGGAGCAAGGTGCTCAGTCCTTTATGGGAAGAGCCATTAAATCTCAGGGTGCATTTGCAGTATTGTATGGGCGCATTCTGAAGAAGTATATTAAAAAAAGCGAGGTTATACTTGGCAGAGCAACAGATGATGTACATGTTGATATTGACTTGAGAAAAGAAGGGCAAGATGCTAACAAAATATCTAGAAGACAAGCTTTAATAAGGATGCAAGCAAATGGTTCTTTCGTTATTAAAAATCTTGGCAAGAGGTCTATCTTCTTAAATGGCAAAGAAGTTGCTACAGGACAAGTGCGGGGTCTTAATGCTAGCAGTCTGATCGAGATTAGAGGCATTTCGCTCATCTTTGAGATCAATAATAGGTGCGTGAGGAGGTTTTTGGAAAATGTGAATGAAAACAGATGA	2133	0.4327	MDPVEVLPPWVPEDDLLLKNAVEAGASLESLAKGAVRFSRRYSVTELRDRWRSLLYDADVSVTASASMAILELAKLSGSGSGSKEGSGEGRKRKVQSIRKQYYAMRKRHGRCREGVNVEKNAVVCDGNGSVVVDGNLNDDVNNLVNYGDYSGLEGVGVGQSNSISDVPLWKTIEDVSVPDMPVQVNVLESENRCSEGREIVSHGLSLEGKCENGGVNAPDAVLGDDAVRISDSLLDLTGDELIYVDIDGKDATAADKPCYDNVDSLLLSSPCDVQGNHVAGVCEPQKLDAETKFAVRSGSSSTVLEGVASSLGSSRGDQHFVSDSGNDVGSSVAAQSSHPELREDNMFCVLNTEDPVVPCNDHITLSILVPHSVALKSRPIVKEVGYSESVMNNQRRNELVGSLNKEDVLSHSFAASQTVRQGLLSNINSSYPPVDLVPKSENPGRNSISAVSRQSNNVNVNINPSHSRLVSATVMPASDRHLKQEEIVALTSAEVYAHTKVEEHKVLPKSEAKSFSLDQEEGDVDDDDDDDEIPDFSDAEAMILEMDLCPTDQDTNASREVLRYQHEETKRTIMRLEQGAQSFMGRAIKSQGAFAVLYGRILKKYIKKSEVILGRATDDVHVDIDLRKEGQDANKISRRQALIRMQANGSFVIKNLGKRSIFLNGKEVATGQVRGLNASSLIEIRGISLIFEINNRCVRRFLENVNENR*	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr3g0318	710	SMART	FHA_2	611	669	IPR000253	GO:0005515
	Apr3g0318	710	SUPERFAMILY	SMAD/FHA domain	604	695	IPR008984	GO:0005515
	Apr3g0318	710	Pfam	FHA domain	612	685	IPR000253	GO:0005515
	Apr3g0318	710	MobiDBLite	consensus disorder prediction	77	96	-	-
	Apr3g0318	710	Gene3D	-	551	705	-	-
	Apr3g0318	710	MobiDBLite	consensus disorder prediction	313	338	-	-
	Apr3g0318	710	ProSiteProfiles	Forkhead-associated (FHA) domain profile.	612	669	IPR000253	GO:0005515
	Apr3g0318	710	MobiDBLite	consensus disorder prediction	512	535	-	-
	Apr3g0318	710	Pfam	N-terminal region of micro-spherule protein	10	72	IPR025999	-
	Apr3g0318	710	MobiDBLite	consensus disorder prediction	521	535	-	-
	Apr3g0318	710	PANTHER	MICROSPHERULE PROTEIN 1	161	709	IPR037912	GO:0002151\|GO:0031011\|GO:0071339
	Apr3g0318	710	PANTHER	MICROSPHERULE PROTEIN 1	1	122	IPR037912	GO:0002151\|GO:0031011\|GO:0071339
	Apr3g0318	710	CDD	FHA	608	696	IPR000253	GO:0005515
	Apr3g0318	710	PANTHER	FHA DOMAIN PROTEIN	161	709	-	-
	Apr3g0318	710	PANTHER	FHA DOMAIN PROTEIN	1	122	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr3g0318	Apr-Chr3	6303697	6308141	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr3g0318	-		-	vra:106769492	700.279

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr3g0318	3	6303697	6308141	Apr3g0318	3	6303697	6308141	ECH