Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0304 ATGTCTGGAGCCCAGTCCCCAAAGACAGCTCTTGAAAAGAGTGATCGTGTTGGTTCATTGAAGAAGAAACTAAGGAATTCCCTGACGAGGAGCAGGAGACGAAGCAGCAGCAAGGTCATGTCGGTTGAAATTGAGGATTTCCGCGATGCTGAGGAGTCGAAAGCTGTTGATGAGTTTCGCCAAACTCTTGTTTTGGAGGAGCTACTCCCTGAGAAGCACGATGATTATCATATGATGCTCAGGTTCCTCAAGGCCAGGAAATTTGACATTGAGAAATCAAAGCAAATGTGGTCTGACATGCTTCAATGGAGGAAGGAATTTGGTGCTGACACCATCATCGAGGATTTTGAATTCAAGGAACTCGATGAAGTGTTGCAATATTATCCTCATGGACATCATGGTGTTGATAAGGATGGACGCCCAGTGTACATTGAGAGATTGGGCCAAGTAGATGCCACCAAGTTGATGCAAGTCACCACCATGGAACGTTATGTCAAATACCATGTCAAGGAGTTTGAGAGGACCTTTGATGTGAAGTTTCCAGCTTGCTCCATTGCTGCAAAGAAGCACATTGATCAAAGCACAACCATCCTTGATGTTCAAGGAGTGGGGCTTAAGAACTTCAACAAACATGCCAGGGAGCTCATCATGACCCTTCAGAAGATTGATGGTGACAATTACCCAGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCCGGATTCAGAATATTGTGGAACACTGTAAAATCCTTCCTTGACCCAAAGACCACATCGAAGATCCATGTTCTTGGCAACAAGTATCAAAGTAAATTGCTTGAAATGATTGATGCAAGTGAGTTGCCAGAGTTTTTGGGTGGCACTTGCACTTGTGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGTCCTTGGAAGGATGCTGAAATCCTAAGGATGGTTCAAAATGATGAGCACAAATGTTCAAGAAAATGCGAGGCCCCTGTCGTTGAAGAGAAGACAACTTCTGATGAGACTCCCAAGATGGAGGCAGATCTCACCTCACAAATGTGTTCTGTCATCGCTCAGGTCCCTTCTACTAAAGCTTACAACTACGAGGACTTTGTCCCTGCTGCGGATAAAACTGCTTGGAAAAAGGTCGAAGAAAATGAGACATTTGCAGTGTCCAAAGCCCCAGTAGATGCCTACGCCATGCTTGATTCATGCAAGATTCACGAAAAAGTGAATTCCCAGATATTCACTGGGGTGATGGCATTTGTGATGGGCATAGTGACGATGGTGAGAATGACAAGAAACATGCCAAAGAAGCTCACTGATGCCAACTTCTACTCGAATTTCTCAGGCAGCCAAGTGATTCCTTCTTCTGACCAAATGACAAACCCTGTCATTTCAGCTCAAGAGTTCATGACTGTCATGAAACGCATGGCTGAGTTGGAAGAGAAGATGATCAACATGAACACCCAGAACCCTTGCATGCCACCTGAGAAAGAGGAAATGCTCAATGCTGCTATTACCCGCGCTGATGCTTTGGAGCAAGAACTTTTGGCGACCAAGAAGGCTTTGGAGGATTCACTTTCCAAGCAAGATGAGCTTTCGGCTTACATTGAGAAAAAGAAGAAGAAGAAGAAGTTGGTATGTACCTTACAACTTAATATGTACCTTTCAACTTAA 1674 0.445 MSGAQSPKTALEKSDRVGSLKKKLRNSLTRSRRRSSSKVMSVEIEDFRDAEESKAVDEFRQTLVLEELLPEKHDDYHMMLRFLKARKFDIEKSKQMWSDMLQWRKEFGADTIIEDFEFKELDEVLQYYPHGHHGVDKDGRPVYIERLGQVDATKLMQVTTMERYVKYHVKEFERTFDVKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKHARELIMTLQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTSKIHVLGNKYQSKLLEMIDASELPEFLGGTCTCADQGGCMRSDKGPWKDAEILRMVQNDEHKCSRKCEAPVVEEKTTSDETPKMEADLTSQMCSVIAQVPSTKAYNYEDFVPAADKTAWKKVEENETFAVSKAPVDAYAMLDSCKIHEKVNSQIFTGVMAFVMGIVTMVRMTRNMPKKLTDANFYSNFSGSQVIPSSDQMTNPVISAQEFMTVMKRMAELEEKMINMNTQNPCMPPEKEEMLNAAITRADALEQELLATKKALEDSLSKQDELSAYIEKKKKKKKLVCTLQLNMYLST* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0304 557 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 2 545 - -
Apr3g0304 557 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 2 545 - -
Apr3g0304 557 SUPERFAMILY CRAL/TRIO domain 120 315 IPR036865 -
Apr3g0304 557 MobiDBLite consensus disorder prediction 1 38 - -
Apr3g0304 557 SUPERFAMILY CRAL/TRIO N-terminal domain 49 116 IPR036273 -
Apr3g0304 557 Pfam CRAL/TRIO, N-terminal domain 59 99 IPR011074 -
Apr3g0304 557 Pfam CRAL/TRIO domain 126 288 IPR001251 -
Apr3g0304 557 Gene3D - 108 320 IPR036865 -
Apr3g0304 557 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 294 IPR001251 -
Apr3g0304 557 PRINTS Cellular retinaldehyde-binding protein signature 78 100 - -
Apr3g0304 557 PRINTS Cellular retinaldehyde-binding protein signature 247 266 - -
Apr3g0304 557 PRINTS Cellular retinaldehyde-binding protein signature 280 289 - -
Apr3g0304 557 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Apr3g0304 557 Coils Coil 501 528 - -
Apr3g0304 557 CDD SEC14 121 289 IPR001251 -
Apr3g0304 557 SMART sec14_4 120 291 IPR001251 -
Apr3g0304 557 Gene3D - 17 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0304 Apr-Chr3 5875922 5880743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0304 54 285 Acyl Lipid Metabolism Gene Families AT5G47730 28.216 1.50e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0304 - - gmx:100785716 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0304 3 5875922 5880743 Apr3g0304 3 5875922 5880743 ECH