Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0302 ATGTCCTCCTTTTTTTCTTCCCCCACGACGGAGTCCCACCTCACCACCGCGAAGACGGTGCTCTCCACAGCCGCATCCGTGGCCGCCACCGCAATGGTGATCCGGTCGGTGGCCAGCGAAATCCTCCCGGCGGAGTTCCGGGACTACTTCACCGGCGGCATCCGCAAAGTGCTCTCGCGCTTCTCTTCAGACATAACGATGGTGATCGACGAGTTCGACGGTCTCGTTAACAACCAAATCTACGAAGCCGCAGAAACCTACCTCGGCGCCAGAATCTCCCCTTCCACTCACAGATTCAAAGTAAGCAAACCCGACACGGAGAAAAGCTTCACCCTCACAATGGAACGCAACGAGTCCTTAACAGACGTCTTTAACGGCGTCAAATTTAACTGGACCCTCGCCTGCCGTCAAGTGGAGTCTAGAAACTTCCACAATCCAAGGGACCTGAACTCCACTTTAAAGTCGGAGGTTCGCTCTTTAGAACTGACATTCCACAAGAAGCACAAGGAGATGGTGCTCAACACTTACCTCCCCTTCATTCTCAAAGAAGCCAAGTCAATGAAGCAAGAGAGCAAGGCGTTGAGGATTTTCACGGTGGATTATCAGAACATGTATGGGAACCCTAACGACGCTTGGGTGGGGACCAATTTGGACCACCCTGCGACGTTTGACACGCTTGCACTTGACGGTGACGTGAAGGAGTTCGTGATGGAGGATTTGAAGAGGTTCGTTAGGAGGAAGGAGTATTATAGGAAGGTTGGGAAGGCGTGGAAGAGAGGGTACTTGCTTTATGGTCCACCGGGTACCGGCAAGTCCAGTTTGATTGCGGCTATGGCTAATTACTTGCACTTTGATATCTATGATTTGGAGCTTACCGAGTTGCAGTATAACTCCGAACTCAGGCGCTTGCTCATTGGACTGGCTAATAGGTCCATTCTTGTCGTTGAGGACATCGATTGCACCATTCAGTTCCACGATCGCATGGCCGAATCCAGAGCTGCCACCGCAAATAACGACAATCAAAAACAGGTCACGCTATCGGGGCTGCTGAATTTCATTGACGGGTTATGGTCAAGTTGTGGAGATGAGAGGATTATAGTGTTCACGACAAACCACAAGGAGAAGCTAGATCCGGCGTTGCTGCGCCCTGGTCGCATGGACGTTCATGTCCCCATGTCCTATTGCACTCCCTGTGGTTTTAGGCAGCTAGCTTCCAATTACCTCGGAATTAAACAACATTCTCTCTTCCGAGAAATTGAGGAGGCAATTCAGAAAACCCAGGTGACTCCAGCTGAAGTGGCAGAACAGCTTCTGAAGAGCAGTGACATTGAAACTACTCTTGAACAGCTCCTAGATTTTCTGAGAAAGAAGAAAGAAAGTCAGGAACTAGAGGCTAAGAGGAAGGAACAGGAGTCCAAGGATAAAGAAGAACACCAGAGGAAGCAGGTTGATGGTGGTGAAAAAGGAGAAAAAAATGATGACGACGAAAAGGAATGTATAACTGAGTTAAAGGCTATTTAA 1521 0.4944 MSSFFSSPTTESHLTTAKTVLSTAASVAATAMVIRSVASEILPAEFRDYFTGGIRKVLSRFSSDITMVIDEFDGLVNNQIYEAAETYLGARISPSTHRFKVSKPDTEKSFTLTMERNESLTDVFNGVKFNWTLACRQVESRNFHNPRDLNSTLKSEVRSLELTFHKKHKEMVLNTYLPFILKEAKSMKQESKALRIFTVDYQNMYGNPNDAWVGTNLDHPATFDTLALDGDVKEFVMEDLKRFVRRKEYYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLHFDIYDLELTELQYNSELRRLLIGLANRSILVVEDIDCTIQFHDRMAESRAATANNDNQKQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHVPMSYCTPCGFRQLASNYLGIKQHSLFREIEEAIQKTQVTPAEVAEQLLKSSDIETTLEQLLDFLRKKKESQELEAKRKEQESKDKEEHQRKQVDGGEKGEKNDDDEKECITELKAI* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0302 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 446 IPR027417 -
Apr3g0302 506 MobiDBLite consensus disorder prediction 461 506 - -
Apr3g0302 506 ProSitePatterns AAA-protein family signature. 364 382 IPR003960 GO:0005524|GO:0016887
Apr3g0302 506 SMART AAA_5 257 396 IPR003593 -
Apr3g0302 506 CDD AAA 237 394 - -
Apr3g0302 506 Gene3D - 213 390 IPR027417 -
Apr3g0302 506 Gene3D - 391 461 - -
Apr3g0302 506 PANTHER PROTEIN HYPER-SENSITIVITY-RELATED 4-LIKE 12 483 - -
Apr3g0302 506 Pfam Domain associated at C-terminal with AAA 42 134 IPR025753 -
Apr3g0302 506 PANTHER BCS1 AAA-TYPE ATPASE 12 483 - -
Apr3g0302 506 Coils Coil 444 478 - -
Apr3g0302 506 Pfam ATPase family associated with various cellular activities (AAA) 262 392 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0302 Apr-Chr3 5864483 5866907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0302 206 387 Miscellaneous Gene Families AT3G47060 31.053 2.06e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0302 - K08900 gmx:100788420 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0302 3 5864483 5866907 Apr3g0302 3 5864483 5866907 ECH