Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0295 ATGGAGAAGCTAGCTTCTTCAACTGCAACTGTTCCCACACGACAATTCCTCTTTCAACTTCAACACTCTCTCTTTCCCGTTCCCACCTTCACAACCCCAAAACCCTTCCACCGAAACCGAACGGAATTGCTGTCACAGCTTTGTTTCAGTAGCAGGCACCGTCGCTTTCAAGCATTCGCCAACAAACAGGACCAACTATGGCTGTGCGAAGAACCACAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTCATATCTGGACGATGACGATGACGCGTCTTTCTTGTCCCTCAGCGACAAGCCCGACAGGAACATTGCCTTGCTCGACGATTACGAGACCGAGGAGCTCGACCTTGATTGTGGCCCCGACCACCGAAGTGGATATGTGGCATTACTTGGGAAGCCAAACGTTGGGAAGAGTACACTGGCTAACCAAATGATTGGCCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACTACGAGGCATCGAATTCTATGTATATGTTCTGGCTCCGATTATCAGATGATACTTTATGACACACCTGGCGTTCTACAGAAGGAAATGCACAAGTTAGACTCAATGATGATGAAAAATGTTCGCAGTGCTGCAGTGAATGCTGACTGTGTTTTGGTCCTTGTTGACGCACGTAAAGCACCTGAAAAAATTGATGAGGTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAACCTCCCACTCTATTGATTCTGAACAAGAAGGACCTTGTTAAACCTGGTGAAGTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGATGTTGACGAGGTTATACCAGTTAGTGCCAAATATGGTCATGGGGTTGAAGATGTCAAGGACTGGATAATGTCAAAGCTTCCCTATGGACCAGCTTATTATCCGAAGGATATTGTCAGTGAGCATCCAGAAAGGTTTTTTGTGTCAGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTGGTAAACTATAAAGCTCGGCTGAATGCAAAAGATTACATACAAGTAGAGATTTTGGTTGAGAAAAACTCTCAGAAGATTATCCTCATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCAACAGCTGCTCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTCGAGATTGAAGTGAAGGTTAAAGAAAATTGGAGACAAGACGAAGGGCTTCTTAAGCACTATGGTTATGGGGGTCAGATACGTGTTCTATAA 1281 0.4247 MEKLASSTATVPTRQFLFQLQHSLFPVPTFTTPKPFHRNRTELLSQLCFSSRHRRFQAFANKQDQLWLCEEPQELEEEEEEEEEDSYLDDDDDASFLSLSDKPDRNIALLDDYETEELDLDCGPDHRSGYVALLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILCICSGSDYQMILYDTPGVLQKEMHKLDSMMMKNVRSAAVNADCVLVLVDARKAPEKIDEVLEEGIGDLKDKPPTLLILNKKDLVKPGEVAKKLEWYEKFTDVDEVIPVSAKYGHGVEDVKDWIMSKLPYGPAYYPKDIVSEHPERFFVSEIVREKIFMQYRNEIPYACQVNVVNYKARLNAKDYIQVEILVEKNSQKIILIGREGKALKLLATAARLDVEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYGGQIRVL* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0295 426 TIGRFAM era: GTP-binding protein Era 129 402 IPR005662 GO:0003723|GO:0005525
Apr3g0295 426 TIGRFAM small_GTP: small GTP-binding protein domain 131 289 IPR005225 GO:0005525
Apr3g0295 426 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 127 297 IPR030388 GO:0005525
Apr3g0295 426 MobiDBLite consensus disorder prediction 73 92 - -
Apr3g0295 426 Gene3D - 124 308 IPR027417 -
Apr3g0295 426 Pfam 50S ribosome-binding GTPase 131 248 IPR006073 GO:0005525
Apr3g0295 426 CDD Era 126 295 IPR030388 GO:0005525
Apr3g0295 426 Hamap GTPase Era [era]. 126 419 IPR005662 GO:0003723|GO:0005525
Apr3g0295 426 PANTHER GTPASE ERA-LIKE, CHLOROPLASTIC 80 420 - -
Apr3g0295 426 Pfam KH domain 331 408 IPR004044 GO:0003723
Apr3g0295 426 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 304 419 IPR009019 GO:0003723
Apr3g0295 426 Gene3D - 309 423 IPR015946 -
Apr3g0295 426 PANTHER GTPASE ERA 80 420 IPR005662 GO:0003723|GO:0005525
Apr3g0295 426 ProSiteProfiles Type-2 KH domain profile. 328 405 IPR004044 GO:0003723
Apr3g0295 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 328 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0295 Apr-Chr3 5755298 5759273 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0295 K03595 - gmx:100795454 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0295 3 5755298 5759273 Apr3g0295 3 5755298 5759273 ECH