Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0281 ATGGGTCTTCTCAGCATTATTCGGAAAATCAAAAGGAAAGAGAAGGAAATGCGAATTCTTATGGTCGGGTTGGACAATTCGGGGAAAACGACAATCGTTTTGAAGATTAACGGGGAGGACACTAGCGTCATCAGCCCCACCCTTGGCTTTAACATTAAAACCATAACTTACCAAAAGTACACTCTAAATATATGGGATGTTGGAGGCCAAAAGACAATAAGATCTTACTGGAGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTAGTCGACAGTTCTGATCTGAGAAGGTTAGATGATTGCAAAATGGAGCTAGATAACCTTCTAAAGGAAGAGAGGCTATCTGGAGCATCCTTACTGATCCTGGCAAATAAACAGGACATTAAAGGCGCCCTTACACCTGAAGAAATAGCTAAGGTGATGAACTTGGAAGCCATGGATAAATCTCGGCACTGGAAAATAGTTGGTTGTAGTGCACACACTGGTGAGGGTCTGCTTGAGGGATTTGATTGGTTGGTCCAAGACATAGCCTCTAGAATCTACATGCTTGACTAA 558 0.4229 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIKGALTPEEIAKVMNLEAMDKSRHWKIVGCSAHTGEGLLEGFDWLVQDIASRIYMLD* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0281 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 179 IPR027417 -
Apr3g0281 185 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Apr3g0281 185 SMART sar_sub_1 3 177 IPR006689 GO:0003924|GO:0005525
Apr3g0281 185 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2 1 185 - -
Apr3g0281 185 ProSiteProfiles small GTPase Arf family profile. 10 177 - -
Apr3g0281 185 PRINTS GTP-binding SAR1 protein signature 18 41 IPR006689 GO:0003924|GO:0005525
Apr3g0281 185 PRINTS GTP-binding SAR1 protein signature 46 70 IPR006689 GO:0003924|GO:0005525
Apr3g0281 185 PRINTS GTP-binding SAR1 protein signature 73 98 IPR006689 GO:0003924|GO:0005525
Apr3g0281 185 PRINTS GTP-binding SAR1 protein signature 151 175 IPR006689 GO:0003924|GO:0005525
Apr3g0281 185 Gene3D - 5 182 IPR027417 -
Apr3g0281 185 SMART rab_sub_5 17 180 - -
Apr3g0281 185 SMART arf_sub_2 1 181 - -
Apr3g0281 185 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED 1 185 IPR044612 GO:0003924
Apr3g0281 185 CDD Arl2 3 176 IPR045873 GO:0003924
Apr3g0281 185 Pfam ADP-ribosylation factor family 4 177 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0281 Apr-Chr3 5482198 5485874 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0281 K07943 - gmx:100805880 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0281 3 5482198 5485874 Apr3g0281 3 5482198 5485874 ECH