Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0276 ATGTTCCTTCTTAGAAGGCAAAGCCAGAATCAGCAGGAGAATGATTCCTCGTATCAAGATACAAAGGTGGCTGAACTCAGAGCTGCTCTTGGGCCCCTCTCTGGTCGTCGATTGAAGTATTGCACAGATGCATGTCTGAGGCGATATTTAGAAGCAAGGAACTGGAATGTTGATAAAGCCAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGTCAACTTATAAGCCAGAGGAAATCCAATGGGCTGAAGTAGCACATGAGGGTGAGACGGGCAAAGTCTCAAGAGCTAACTTTCATGATCGACTTGGGAGGACTGTGCTTATTATGAGGCCAGGGATGCAGAACACGGCATCAGCTGAAAATAATATCAGGCATTTAGTCTATCTGTTGGAAAATGCTGTCCTAAATCTTTCTGAAGGTCAAGAACAAATGTCATGGTTGATAGACTTCACAGGATTTACGCTTAATACAAACGTTTCTATTAAAACAGCTCGTGATATTGTTTACATATTACAAAACCACTATCCAGAAAGGCTTGCTATTGCCTTTCTGTACAATCCTCCTAGAATATTTCAGGCTTTCTGGAAGGCCATCAAATACTTCCTGGATCCCAAGACAGTCCAGAAGGTCAAGTTTGTTTATCCTAATAACAAGGAAAGTGTGGAGCTGATGAAATCACTCTTCGACCTAGATAACCTTCCAAGTGAATTTGGGGGAAAAGCAACTTTAAAGTATGACCATGAAGAGTTCTCACAGTTGATGGCTGAGGATGATGTGAAAACTGCCAAGTTCTGGGGACTTGATGAGAAGCCCATCAATACTAAGAAAGGGCATTCTGTGGCAGAGGTGGCACCGGAACCTGTAGCTGTTCAGCCAGTTAGTTGA 885 0.4305 MFLLRRQSQNQQENDSSYQDTKVAELRAALGPLSGRRLKYCTDACLRRYLEARNWNVDKAKKMLEETLKWRSTYKPEEIQWAEVAHEGETGKVSRANFHDRLGRTVLIMRPGMQNTASAENNIRHLVYLLENAVLNLSEGQEQMSWLIDFTGFTLNTNVSIKTARDIVYILQNHYPERLAIAFLYNPPRIFQAFWKAIKYFLDPKTVQKVKFVYPNNKESVELMKSLFDLDNLPSEFGGKATLKYDHEEFSQLMAEDDVKTAKFWGLDEKPINTKKGHSVAEVAPEPVAVQPVS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0276 294 CDD SEC14 99 240 IPR001251 -
Apr3g0276 294 SUPERFAMILY CRAL/TRIO domain 82 256 IPR036865 -
Apr3g0276 294 MobiDBLite consensus disorder prediction 1 20 - -
Apr3g0276 294 PANTHER GH16843P 6 291 - -
Apr3g0276 294 Gene3D - 3 279 IPR036865 -
Apr3g0276 294 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 6 291 - -
Apr3g0276 294 Pfam CRAL/TRIO domain 98 239 IPR001251 -
Apr3g0276 294 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Apr3g0276 294 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Apr3g0276 294 SUPERFAMILY CRAL/TRIO N-terminal domain 10 82 IPR036273 -
Apr3g0276 294 SMART sec14_4 87 242 IPR001251 -
Apr3g0276 294 PRINTS Cellular retinaldehyde-binding protein signature 45 67 - -
Apr3g0276 294 PRINTS Cellular retinaldehyde-binding protein signature 162 183 - -
Apr3g0276 294 PRINTS Cellular retinaldehyde-binding protein signature 231 240 - -
Apr3g0276 294 Pfam CRAL/TRIO, N-terminal domain 42 66 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0276 Apr-Chr3 5421530 5425064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0276 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 28.293 6.37e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0276 - - gmx:100800024 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0276 3 5421530 5425064 Apr3g0276 3 5421530 5425064 ECH