Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0270 ATGGGAGACTTCAACAACGATCCTCTCATGCGCAACCAAAACGCCGCTGTTCAGGCCCGTACCAAAGCCCAGAACCGCGCCAACGTCCTTCAGCTCAAGCTGATTGGACAGAGTCACCCTACTGGTCTCACAGCGAACCTGTTGAAGCTCTTTGAGCCTAGGCCTCCCTTGGAATATAAACCTCCTCCCGAGAAAAGAAAGTGTCCACCGCTTACAGGGATGGCGCAGTTCGTGAGTAAGTTTGCTGAGCCTGGTGATCCTGAATATGCTCCTCCTGTGCCAGTGACTGAGACTCCTGCACAAAGAAGAGCAAGAATACACAAGTTAAGACTAGAGAAGGGAGCAGAAAAGGCTGCTGAGGAGCTTGAGAAATGTGATGATCCACACAACGACCCAAATATGTCAGGAGATCCATACAAGACATTGTTTGTGGCAAGACTCAGTTATGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTTCGATTGGTTACTGACACTGTATCAAATAAGCCCAAGGGTTATGCATTCATTGAGTATTTGCACACGAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAAGGTAAAAGGGTGCTTGTGGATGTTGAACGTGGGAGGACTGTTCCAAATTGGCGCCCTCGCAGACTAGGTGGTGGGCTTGGAACTACTAGAGTTGGGGGTGAAGAAGTTAATCAGCGTCATTCTGGGAGGGAGCAACAGCAGTCAGGACCTTCTCGTTCTGAAGAACCTAGAGTGCGGGAGGATCGGCATGGTGATCGGGACAGAGAAAAGTCACGGGAAAGAGGCAAAGAAAGAGATAGAGAACGGGAGAGGTCACGTGAACGCTCTAGCGATAGGGCCAGGGACCGTGATTATAGAGATGATAGGCACTACAGAGACCGGGATAGGAATAGGGACAGAGACAGGGAAAGGGAAAGAGAGAGAGATCGTGGACGTGATCGAGATAGAACACGCGACCGTGATCGTGGCCGAGAGCGCGACCGTGATCGTGATCGAGAGAGGGATCGTGACCGGGACCGAGAACATGATCGTTATCGGGAGAGAGATAGGGATTATGAAATTGGGGAAACTGATCGAGGACGCTCGCATGATAGGGAGACTGATTATGATCATGTGGAATCTAAACATGAGAAGGAACGGCATGGTGAAAGAGAGCGTGACTATGACCCTGAGGATGATCGTGGGTGGTACAACCAACATGGGCATGGACATAATAAGTATGGAGATCCCGACCATGATCCTGATCATTATGATCACTATGAGCATCACCGAGGAAGGGGGCAGTATGATGATGGAGATGACCATGGTGAACATTACAATCAATATCCTGATCGTGATAGGATGGAAGATGACTACCACACTGAAAGGGCAACATCTGAATCTCGTGACAGGGAGAAAAATCAGGATATGGACCGTGAATATCGTTGCTCAGAGAGGTCTCATTCCAGGGAATATGATTACTAG 1524 0.4869 MGDFNNDPLMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYAPPVPVTETPAQRRARIHKLRLEKGAEKAAEELEKCDDPHNDPNMSGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDTVSNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGKRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSGPSRSEEPRVREDRHGDRDREKSRERGKERDRERERSRERSSDRARDRDYRDDRHYRDRDRNRDRDRERERERDRGRDRDRTRDRDRGRERDRDRDRERDRDRDREHDRYRERDRDYEIGETDRGRSHDRETDYDHVESKHEKERHGERERDYDPEDDRGWYNQHGHGHNKYGDPDHDPDHYDHYEHHRGRGQYDDGDDHGEHYNQYPDRDRMEDDYHTERATSESRDREKNQDMDREYRCSERSHSREYDY* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0270 507 MobiDBLite consensus disorder prediction 222 507 - -
Apr3g0270 507 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 356 - -
Apr3g0270 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Apr3g0270 507 MobiDBLite consensus disorder prediction 260 507 - -
Apr3g0270 507 SMART rrm1_1 141 214 IPR000504 GO:0003723
Apr3g0270 507 SUPERFAMILY RNA-binding domain, RBD 129 240 IPR035979 GO:0003676
Apr3g0270 507 Gene3D - 127 252 IPR012677 -
Apr3g0270 507 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 42 130 IPR022023 -
Apr3g0270 507 MobiDBLite consensus disorder prediction 117 137 - -
Apr3g0270 507 CDD RRM_snRNP70 139 229 IPR034143 GO:0030619
Apr3g0270 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 211 IPR000504 GO:0003723
Apr3g0270 507 PANTHER - 1 356 - -
Apr3g0270 507 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0270 Apr-Chr3 5312698 5320805 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0270 K11093 - gmx:100800903 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0270 3 5312698 5320805 Apr3g0270 3 5312698 5320805 ECH