LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g0210	ATGGCATCAACTATTCTGTTCAATTTCAGGCTCTCTCAGTTTAACACACTGCACCATCAACGGGTAAAGAGACCAAAAGCTCTTGTATCCTCCTCTCGTATCATTCCACGTCATGTTTCTTCCATTAACGATCATTTGGGGCTAAAACATGTCACATACCCGCTTCTTCAATCTCACTCTACCCCTAAGCGCAGATTCCACGTTGGAGCGCAGAAGGAGAATTATGCAGGGGAAGGCTCTGAATCTCTTGTTTCTGACGCAACGTACCAAGAGAAATTTTCTTGGTCTTCTGTAATTCTTCCGTTTCTGTTCCCTGCGTTGGGTGGCTTGTTATTTGGTTATGATATTGGTGCCACCTCCGGTGCTACAATTTCACTGCAGTCTCCTGAGCTTAGTGGTATAACATGGTTCAATCTTTCTGCCATTCAGCTGGGACTTGTGGTTAGTGGTTCCCTATATGGGGCTCTTCTTGGCTCACTTCTCGCATATGCCATAGCTGATTTCCTGGGGAGGAAGCGACAACTCATTGCTGCAGCCTTGTTGTATGTATTCGGCGGTGCAATTACTGCCTATGCACCAGAACTTGGTGTTCTCTTAGCAGGAAGGCTGCTTTATGGACTTGGTATAGGTTTGGCCATGCACGGGGCTCCTTTATATATCGCAGAAACTTGTCCATCACAAATCCGTGGGACTCTAGTATCATTGAAAGAACTCTTCATTGTCCTTGGGATTCTGCTGGGTTATTTTGTGGGAAGCTTTCAGATTAATACAGTAGGGGGGTGGCGGTTTATGTATGGAATTAGTGCTCCACTTGCTATATTAATGGTGCTTGGAATGTGGATTCTCCCCCCTTCTCCACGGTGGTTGCTTCTCAGAGCAGTGCAAGGAAAAGGTTCTTTTCGAGATTTAAAGGAAAAAGCAATTGTTTCCCTGAGCAAATTAAGGGGCCGACCACCAGGTGGCAAAGAATCTGAGAGGCAAATAGAAGAGACCCTTCTCTCATTGAAGTCTGCCTATTCAGATCAGGAATCAGAGGGGAGTTTCTTAGAGGTGTTTCAGGGTCCCAATCTGAAAGCTTTCATAACCGGTGGGGGCCTAGTCTTATTTCAACAGATAACAGGTCAACCAAGTGTTCTGTATTATGCTGGCTCAATTCTTCAGAGTGCTGGATTCTCTGCTGCATCCGATGCTACTAAAGTGTCAGTTGTTATAGGCTTATTCAAGTTACTAATGACATGGATTGCTGTCCTAAAAGTTGATGATTTAGGGAGAAGACCTCTGCTGATTGGAGGTGTCAGCGGCATTGCCCTTTCTTTAGTTCTCCTTTCTGCTTATTATAAATTTCTTGGAGGGTTCCCTCTTGTTGCTGTTGCGGCTTTACTTCTTTATGTTGGTTGCTATCAGATATCATTTGGGCCAATAAGTTGGCTAATGGTATCAGAGGTCTTCCCGCTTCGCACTAGAGGACGGGGGATTAGTCTGGCTGTTCTTACCAACTTTGCTTCAAATGCTGTTGTCACCTTTGCATTCTCTCCATTAAAGGAGCTTCTTGGAGCAGAAAACCTCTTTCTCCTTTTTGGGGCTATTTCTATTGTGTCACTTCTGTTCATTATATTTTCTGTCCCGGAGACAAAAGGCTTGAGTTTAGAAGATATAGAATCCCAAATCTTGAAGTGA	1677	0.4436	MASTILFNFRLSQFNTLHHQRVKRPKALVSSSRIIPRHVSSINDHLGLKHVTYPLLQSHSTPKRRFHVGAQKENYAGEGSESLVSDATYQEKFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGITWFNLSAIQLGLVVSGSLYGALLGSLLAYAIADFLGRKRQLIAAALLYVFGGAITAYAPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILLGYFVGSFQINTVGGWRFMYGISAPLAILMVLGMWILPPSPRWLLLRAVQGKGSFRDLKEKAIVSLSKLRGRPPGGKESERQIEETLLSLKSAYSDQESEGSFLEVFQGPNLKAFITGGGLVLFQQITGQPSVLYYAGSILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVAALLLYVGCYQISFGPISWLMVSEVFPLRTRGRGISLAVLTNFASNAVVTFAFSPLKELLGAENLFLLFGAISIVSLLFIIFSVPETKGLSLEDIESQILK*	559

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr3g0210	558	TIGRFAM	SP: MFS transporter, sugar porter (SP) family	89	552	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr3g0210	558	Gene3D	MFS general substrate transporter like domains	91	556	IPR036259	-
	Apr3g0210	558	PRINTS	Sugar transporter signature	109	119	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr3g0210	558	PRINTS	Sugar transporter signature	199	218	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr3g0210	558	PRINTS	Sugar transporter signature	370	380	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr3g0210	558	PRINTS	Sugar transporter signature	457	478	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr3g0210	558	PRINTS	Sugar transporter signature	480	492	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr3g0210	558	CDD	MFS_GLUT10_12_Class3_like	104	552	-	-
	Apr3g0210	558	PANTHER	D-XYLOSE-PROTON SYMPORTER-LIKE 2	54	558	-	-
	Apr3g0210	558	PANTHER	D-XYLOSE-PROTON SYMPORTER-LIKE 3, CHLOROPLASTIC	54	558	-	-
	Apr3g0210	558	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	101	545	IPR020846	GO:0022857
	Apr3g0210	558	ProSitePatterns	Sugar transport proteins signature 2.	204	229	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Apr3g0210	558	SUPERFAMILY	MFS general substrate transporter	90	553	IPR036259	-
	Apr3g0210	558	Pfam	Sugar (and other) transporter	104	553	IPR005828	GO:0016021\|GO:0022857\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr3g0210	Apr-Chr3	3801262	3805246	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr3g0210	18	558	Organic Solute Cotransporters	AT5G59250	72.761	0.0	771

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr3g0210	-		-	gmx:100809316	913.679

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr3g0210	3	3801262	3805246	Apr3g0210	3	3801262	3805246	ECH