Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0208 ATGCATGCTTTCCTCAGAAGCACAACATTGCTTAGAATTCCCACGAGAAATGGCATCATCATCAACCTTCGATTGTTCCGATCGGAATCCGAAAGCTATGCTGAACTCATCGATATATACGCTCGAGATCGAGCGTTTCACCTGGGTAAGAAGCTTCACGCGCGCCTAATCACCAGCGGATTTATTCGCTTCAACGTCATTACTTCCAACCTCGTATCCTTGTACGCGTGTTGTGGCCAACTCTACCACGCGCGGAAACTGTTCGACAGAATTCCAACGTCAAATGTTCGTCGCTGGATCGCCCTCATCGGCGCTAGCGCTCGCTGTGGCTTCTACGATCACGCTCTCGCCGTGTTCTCTGAGATGCAAACCATTCAAGGGCTTAAGCACAACTACGTTTTCGTCATCCCAAGCGTTCTCAAAGCTTGCGGCCATCTTGGTGATAGAATCACCGGAGATAAAATACATGGCTTGATTTTGAAATGTTCGTTCGAGCTTGATGCTTTTGTGTCCAGTGCTTTGATTGTTATGTACTCCAAGTGTAGGAGTGTTGAGGATGCACGCAAGGTGTTTGATGGGATGACTGTGAAAGATTTGGTTGCTCTGAATGCTGTTGTTGCTGGGTATGCTCAACAGGGTCTTGCAAATGAGGCACTGGGTTTGGTGCAAAGTATGGAATTGATGGGTGTGAAGCCAAATGTGGTAACTTGGAATTCTTTGATATCTGGGTTTTCACAGAAAGGTGACCAAGCAATGGTGTCTGAGATGTTTAGATTGATGATTGAAGATGGTGTTGAGCCTGATGTGGTATCATGGACTTCTGTTATATCTGGTTTTGTGCAGAACTTTCGAAATAAGGAAGCATTTGACACGTTTAAGCATATGTTGCGTCATGGGTTCTGCCCAACTTCAGCTACTATCAGCACCCTTTTGCCTGCTTGTGCTACTGCAGCAAGAGTGAGGGTTGGGAAGGAGATTCATGGGTATGCTTTGGTGAGTGGAGTGGAGGAAGATATTTTTGTAAGGAGTGCGCTGGTTGACATGTATGCAAAATGTGGCTTCATTTCTGAAGCGAGGACACTGTTTGGTAGGATGCCAGAGAAGAACACGGTTACGTGGAACTCGATCATTTTTGGTTTTGCAAATCATGGGTATTGTGAAGAAGCTGTTGAGCTCTTCAATCAGATGGAGATGCAAAGGGAAGCCAAGCTGGATCATTTGACTTTCACGGCAGCTCTCACTGCATGCAGTCATGTTGGAGATATTGAACTTGGGCAAAGGCTATTCAAGATCATGCAAGAAAAGTACAATATTGAGCCGAGACTGGAGCATTATGCGTGCATGGTGGATCTCTTTGGTCGAGCAGGGAAACTGGACGAAGCATATTGCATGATCAAGACAATGCCTATCGAACCTGATATGTTTGTATGGGGTGCATTTCTGGCTGCTTGTAGAAATCATGGGCATGTGGAGCTTGCGGAAGTGGCTGCTATGCATCTGTCTGAATTAGAGCCCGAGAGTGCTGCGAACCGTCTTCTGTTGTCCAGCCTATATGCCGATGCTGGTAAATGGGGCAAGGTTGAGAGGATCAAGAAAAGGATTAAGGGGGGAAAACTCAAAAAACTTCAAGGGTTGAGTTGGATTGATAATTGA 1653 0.4598 MHAFLRSTTLLRIPTRNGIIINLRLFRSESESYAELIDIYARDRAFHLGKKLHARLITSGFIRFNVITSNLVSLYACCGQLYHARKLFDRIPTSNVRRWIALIGASARCGFYDHALAVFSEMQTIQGLKHNYVFVIPSVLKACGHLGDRITGDKIHGLILKCSFELDAFVSSALIVMYSKCRSVEDARKVFDGMTVKDLVALNAVVAGYAQQGLANEALGLVQSMELMGVKPNVVTWNSLISGFSQKGDQAMVSEMFRLMIEDGVEPDVVSWTSVISGFVQNFRNKEAFDTFKHMLRHGFCPTSATISTLLPACATAARVRVGKEIHGYALVSGVEEDIFVRSALVDMYAKCGFISEARTLFGRMPEKNTVTWNSIIFGFANHGYCEEAVELFNQMEMQREAKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKYNIEPRLEHYACMVDLFGRAGKLDEAYCMIKTMPIEPDMFVWGAFLAACRNHGHVELAEVAAMHLSELEPESAANRLLLSSLYADAGKWGKVERIKKRIKGGKLKKLQGLSWIDN* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0208 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Apr3g0208 550 PANTHER OS03G0271300 PROTEIN 244 549 - -
Apr3g0208 550 PANTHER OS03G0271300 PROTEIN 28 195 - -
Apr3g0208 550 PANTHER OS03G0271300 PROTEIN 197 245 - -
Apr3g0208 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 399 IPR002885 -
Apr3g0208 550 Pfam PPR repeat 228 249 IPR002885 -
Apr3g0208 550 Pfam E motif 487 549 IPR046848 -
Apr3g0208 550 Pfam PPR repeat family 267 315 IPR002885 -
Apr3g0208 550 Pfam PPR repeat family 368 417 IPR002885 -
Apr3g0208 550 Gene3D Tetratricopeptide repeat domain 216 327 IPR011990 GO:0005515
Apr3g0208 550 Gene3D Tetratricopeptide repeat domain 400 548 IPR011990 GO:0005515
Apr3g0208 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Apr3g0208 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Apr3g0208 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 244 549 - -
Apr3g0208 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 195 - -
Apr3g0208 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 197 245 - -
Apr3g0208 550 Gene3D Tetratricopeptide repeat domain 328 399 IPR011990 GO:0005515
Apr3g0208 550 Pfam PPR repeat 445 468 IPR002885 -
Apr3g0208 550 Pfam PPR repeat 69 95 IPR002885 -
Apr3g0208 550 Pfam PPR repeat 99 123 IPR002885 -
Apr3g0208 550 Pfam PPR repeat 172 197 IPR002885 -
Apr3g0208 550 Gene3D Tetratricopeptide repeat domain 22 149 IPR011990 GO:0005515
Apr3g0208 550 TIGRFAM PPR: pentatricopeptide repeat domain 371 398 IPR002885 -
Apr3g0208 550 TIGRFAM PPR: pentatricopeptide repeat domain 201 234 IPR002885 -
Apr3g0208 550 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Apr3g0208 550 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0208 Apr-Chr3 3792257 3793983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0208 83 549 Glycoside Hydrolase AT3G49170 32.604 2.63e-82 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0208 - - gmx:100790576 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0208 3 3792257 3793983 Apr3g0208 3 3792257 3793983 ECH