Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0201 ATGAATTTTTCAAGGATTGGGCGCTCCTTGTCGCGCTCGTCTCGCGCCAGAATTTTTTCGCATGGTGATCGGAGACTGAGAACCCTTCTCGGAGCGCCATGTGCGAATGCCTATTCCGACGAAGCCGAAGGGCTATTAGGGTTTTTTAGGGGCTACGTGTCTTCTGCCAGAGCTCGCAGTAATGCCCTCGTTTCCAATTTCCCTGACTTTAAATCTGTTGCCGCAAACCCTAGGCTTCACCGATTGTTTTCCAGCGAAGCCCCAAAGAAGAAGAATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAATTCCAAATGGAAATGACAAAAAATATGAGTCCAAAGAGGACTCAAACACAAACACAGATAATCATGGAGGTTTTGAGGAAGCTTTTATGAAGAATCTCCAGAAAATAATCACCCCATTTTTGGTGATAGGGCTATTTTTTGCTTCCCTTTCTTATGATCCTAATGAACAGAAGCAGATTAGCTTTCAGGAGTTTAAAAACAAGCTTTTGGAACCAGGATTAGTAGAGCGTATTGTTGTCTCTAATAAATCAGTTGCCAAAGTATATGTACGAAGCACTCCCCGTAACCAAATAGACAGTGAAGTAGTCCAAGGGACCCTTCCTGCAAAGGATTCTGGAGGCCAATATAAATATTATTTCAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGCTAGAGGAAGCACAAGAAGCATTAGGCATTGACCCTCATGATTATGTGCCTGTTACATATTCTTCTGATGTGGTTTGGTACATGGAATTGATGAGACTTGCTCCAACACTGTTGCTTTTGGGATCTCTCTTGTATATGGGAAGGAGGATGCAAAGTGGACTAGGTGTTGGTGGTGGTGGTGCTGGAAAGGGTGCTCGTGGAATATTCAACATAGGAAAAGCTCATGTTACTAAAGTTGACAAAAATACCAAAAACAAGGTCTATTTCAAAGATGTTGCTGGTTGCGATGAGGCAAAGCAAGAAATTATGGAGTTTGTGCACTTCCTCAAGAACCCGAAAAAATATGAAGAACTTGGTGCAAAAATTCCAAAAGGTGCTCTCTTGGTGGGTCCTCCAGGCACTGGAAAAACCCTTTTAGCGAAAGCAACTGCAGGGGAGTCTGGTGTGCCATTTCTTTCCATATCTGGATCTGATTTCATGGAAATGTTTGTTGGTGTTGGACCATCCAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCTAGTATAATATTTATTGATGAAATTGATGCAATTGGTCGAGCAAGAGGACGTGGCGGTTTCTCAGGGGCAAACGACGAGCGTGAAAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACTACTTCCGGAGTTGTTGTTCTGGCCGGAACAAACAGGCCTGATATTTTAGACAAAGCTCTACTTAGGCCTGGGCGATTTGACCGCCAGATATCCATTGACAAACCTGATATTAAAGGCCGTGACCAGATATTTCAAATCTACTTGAAAAAGATCAAGCTTGACCATGAGCCTTCATATTATTCTCAAAGGCTCGCAGCCCTTACTCCTGGATTTGCTGGAGCTGACATTGCTAATGTTTGCAATGAGGCTGCTCTGATTGCTGCAAGGGGTGAGGAAACCCAAGTCAAAATGAAACATTTTGAGGCAGCTATTGATAGGATCATTGGTGGTTTGGAGAAGAAGAACATGGTAATAAGCAAGCTGGAAAGGCGCACTGTTGCTTACCACGAATCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACACGCTGAGCCCTTGCTGAAAGTAACTATTGTTCCTCGTGGCACAGCAGCTCTTGGGTTTGCCCAATATGTTCCAAATGAGAATCTTCTGATGACAAAGGAGCAGCTTTTTGATATGACTTGCATGACACTAGGTGGTCGGGCTGCGGAGCAGGTTCTTATAGGGAAAATCTCAACAGGAGCACAGAATGACTTGGAAAAAGTGACCAAGATGACATATGCCCAAGTAGCAGTTTATGGTTTCAGCGAAAAGGTGGGTCTCCTCTCTTTCCCTCCGAAAGAGGGCTCGTACGAGCTGTCGAAACCATACAGCAACAAAACTGCTGCAATCATTGATAGCGAAGTGCGGGAATGGGTGACCAAAGCGTACGAACGCACAGTACAGCTTGTCGAGGAACACAAGGAAAAAGTAGCTCAAATTGCAGAGCTGCTGCTTGAAAAAGAAGTACTTCATCAGGATGACTTGGTTCAAGTTTTAGGTGAGCGGCCATTCAAGGCTGCTGAACTCTCCAATTATGATAGATTTAAACAAGGTTTTCAGGAGGAGGAAGAAAAAATTGCCTCAGAGAGCGCTGCTGAATCGCCTGAGGAAGGTGGTGGCTCTCCACCTTTAGAGCCTCAGGTTGTTCCCACATAG 2439 0.4424 MNFSRIGRSLSRSSRARIFSHGDRRLRTLLGAPCANAYSDEAEGLLGFFRGYVSSARARSNALVSNFPDFKSVAANPRLHRLFSSEAPKKKNYENFYPKEKKEIPNGNDKKYESKEDSNTNTDNHGGFEEAFMKNLQKIITPFLVIGLFFASLSYDPNEQKQISFQEFKNKLLEPGLVERIVVSNKSVAKVYVRSTPRNQIDSEVVQGTLPAKDSGGQYKYYFNIGSVESFEEKLEEAQEALGIDPHDYVPVTYSSDVVWYMELMRLAPTLLLLGSLLYMGRRMQSGLGVGGGGAGKGARGIFNIGKAHVTKVDKNTKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGEETQVKMKHFEAAIDRIIGGLEKKNMVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPPKEGSYELSKPYSNKTAAIIDSEVREWVTKAYERTVQLVEEHKEKVAQIAELLLEKEVLHQDDLVQVLGERPFKAAELSNYDRFKQGFQEEEEKIASESAAESPEEGGGSPPLEPQVVPT* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0201 812 PANTHER ATP-DEPENDENT PROTEASE 29 811 - -
Apr3g0201 812 Gene3D Peptidase M41 577 778 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr3g0201 812 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 786 IPR005936 GO:0004176|GO:0004222|GO:0016020
Apr3g0201 812 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 262 760 IPR005936 GO:0004176|GO:0004222|GO:0016020
Apr3g0201 812 MobiDBLite consensus disorder prediction 94 126 - -
Apr3g0201 812 Gene3D - 495 571 - -
Apr3g0201 812 Gene3D - 304 493 IPR027417 -
Apr3g0201 812 SUPERFAMILY FtsH protease domain-like 577 766 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr3g0201 812 CDD AAA 357 494 - -
Apr3g0201 812 Gene3D - 148 258 - -
Apr3g0201 812 Pfam FtsH Extracellular 140 247 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Apr3g0201 812 SMART AAA_5 356 496 IPR003593 -
Apr3g0201 812 Pfam AAA+ lid domain 523 562 IPR041569 -
Apr3g0201 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 567 IPR027417 -
Apr3g0201 812 ProSitePatterns AAA-protein family signature. 464 482 IPR003960 GO:0005524|GO:0016887
Apr3g0201 812 Pfam Peptidase family M41 576 759 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr3g0201 812 MobiDBLite consensus disorder prediction 781 812 - -
Apr3g0201 812 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 29 811 - -
Apr3g0201 812 MobiDBLite consensus disorder prediction 94 123 - -
Apr3g0201 812 Pfam ATPase family associated with various cellular activities (AAA) 361 493 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0201 Apr-Chr3 3711135 3716590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0201 3 812 Miscellaneous Gene Families AT2G29080 76.044 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0201 K08956 - gmx:100806656 1319.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0201 3 3711135 3716590 Apr3g0201 3 3711135 3716590 ECH