Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0013 ATGCCGGTGGCTGCTTCCGCCATTTACTTCCTCAACCTCCGTGGAGACGTTCTCATCAACCGCCTCTATCGCGACGATGTTGGGGGAAATATGGTGGATGCATTTCGGACTCATATTATGCAAACGAAGGAGCTTGGTACGTGTCCTGTGAGGCAGATTGGTGGATGCTCTTTCTTTTACATGAAGATCAGCAATGTCTACATTGTCATTGTTGTCAGCAGCAACGCCAATGTAGCTTGTGCTTTCAAGTTTGTTGTTGAGGCTGTTGCACTGTTCAAATCATATTTTGGTGGAGCTTTTGATGAAGATGCAATTCGCAATAATTTTGTTCTCATTTACGAACTTCTAGATGAAATTATGGACTTTGGTTACCCCCAAAATCTCTCACCAGAGATCTTAAAGCTTTATATCACTCAGGAAGGAGTGCGTTCCCCATTTTCATCCAAGCCCATAGATAGACCTATTCCAAATGCAACCTTACAAGTCACTGGTGCTGTTGGTTGGCGGAGAGAAGGTCTTGTCTACAAAAAGAATGAGGTCTTCCTTGATATTGTGGAAAGCGTGAATCTTCTTATGTCTTCAAAAGGTAGTGTTCTGCGTTGTGATGTCACTGGGAAGATTCTGATGAAATGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTTTGAATGACAAGATTGGTCTTGAGAAAGAATCACAACTTAAAAACCGTCCTATTAAAAGTGGTAAAACTATCGAGCTTGATGATGTTACTTTCCATCAATGTGTAAACTTGACAAGGTTCAACTCAGAGAAGACTGTTAGTTTTGTACCGCCTGATGGTGAATTTGAACTAATGAAGTATCGAATCACTGAGGGAGTTAATCTTCCCTTCAAAGTGTTGACAACTGGCAAGGAACTAGGTCGATCACGATTGGAAGTGAACGTTAAGGTAAAGAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAAATTCCTGTGCCAAAACAAACAGCAAAAACAAGTTTCACAGTTACATCAGGCCGAGCAAAATACAATGCATCTATTGATTGTTTGGTTTGGAAGATTAGAAAATTCCCTGGGCAAACTGAGGCAACCTTGAATGCAGAAGTTGAACTTATTTCCACAATCACAGAAAAGAAACCTTGGACCAGACCACCAATTCAGATGGAATTTCAGGTTCCAATGTTCACAGCGTCCGGTTTACGTGTCCGTTTTCTTAAGGTATGGGAGAAGAGCGGGTACAATACCGTTGAGTGGGTTCGTTACATTACAAAAGCAGGATCCTACGAGATTAGGTGCTAG 1317 0.4153 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMKISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPIDRPIPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKNRPIKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLTTGKELGRSRLEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTSFTVTSGRAKYNASIDCLVWKIRKFPGQTEATLNAEVELISTITEKKPWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0013 438 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 166 437 IPR036168 -
Apr3g0013 438 Pfam Adaptor complexes medium subunit family 167 438 IPR028565 -
Apr3g0013 438 Gene3D - 5 145 - -
Apr3g0013 438 Gene3D Mu homology domain, subdomain B 174 433 - -
Apr3g0013 438 ProSiteProfiles Mu homology domain (MHD) profile. 177 437 IPR028565 -
Apr3g0013 438 CDD AP-2_Mu2_Cterm 175 437 IPR043512 -
Apr3g0013 438 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr3g0013 438 PRINTS Clathrin coat assembly protein signature 102 129 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr3g0013 438 PRINTS Clathrin coat assembly protein signature 168 196 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr3g0013 438 PRINTS Clathrin coat assembly protein signature 248 275 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr3g0013 438 PRINTS Clathrin coat assembly protein signature 317 332 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr3g0013 438 PRINTS Clathrin coat assembly protein signature 357 368 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr3g0013 438 PANTHER AP COMPLEX SUBUNIT MU 17 438 - -
Apr3g0013 438 Gene3D Mu homology domain, subdomain B 290 437 - -
Apr3g0013 438 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 166 186 IPR018240 GO:0006886|GO:0016192|GO:0030131
Apr3g0013 438 PANTHER AP-2 COMPLEX SUBUNIT MU 17 438 - -
Apr3g0013 438 SUPERFAMILY SNARE-like 6 142 IPR011012 -
Apr3g0013 438 PIRSF AP_complex_mu 4 438 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr3g0013 438 CDD AP2_Mu_N 6 144 IPR043532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0013 Apr-Chr3 181876 187977 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0013 K11826 - gmx:100790260 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0013 3 181876 187977 Apr3g0013 3 181876 187977 ECH