Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0008 ATGGCCATGAGGCCACACGGTGAAAGAGACCCTCCACAACCACAACAAGCATCTTCCCGTGCCTTTCTCGACACAGTACAAGAAATCACCTCAATCTATAGGTCACTGCCACCTAGACCTTCTATTGAAGAAGTGGAAGCTGCCACGTCAACTATGGACACCGTGAACACCGAGGAAAAAATCAGACTCAACGAAATCTCAATGCAAGAAATCCCTCACCATGTCCCTCAAGACCTCTTTTATGTCCTTCAGGAACTCAGGAAGACCATGGTCGTGTTTCAGAGCCATCAACAGAGGAGAGAGGCACTTCACCTTCTTCAGCAAGAAAAGATGTTTCAAACCTTCGCTGATCTCATTCAGAGAGCTTCTCAGTTCGTTTCTGGAGATGCCCAGGAACTAAAGTTTCCTACTTTAGCCCAACCCCATGTTGCGATCACTGATGATACTTTGGTTAAGAAGAAGGAAGAGGATGAACCCCAGAAAAACGATTTCGAAGCGGTAATGGGTTCCTCTTCAGCAGGCGATGGAAGCAGTGAGAAATTAAGTCTAATGAAAGCGGCTACTCTTATTGAAATTTGCGCCAGTAATGGAGCTAAAAGCCTTGAGCTTAGAGGGAAATTGGTGGATCAGATGGAGTGGTTGCCGGTTTCAATTGGGAAATTATCTGATGTCACTGAAATGGACCTATCTGAAAACAGAATCATGGCTCTTCCGACAACCATTGGGGCTCTAAAGGCCTTAACAAAGCTTGATCTTCACTCAAACCAACTTATAAACCTTCCTCAATCATTTGGTGAATTGATAAACCTCATTGATCTTGACCTCCACGCCAACAGATTGAGATCACTTCCTCCTACTTTTGGAAACTTGACAAATCTTACTGGTCTAGACTTGAGTTCAAATGAGTTCACAGAGTTACCAGAGACAATTGGAAATTTGAACAGCTTGAAGAGATTGATTGTTGAAACAAACGAGCTTGAGGAACTGCCTTATACAATTGGAAATTGCTCTTCACTATCTGTGCTTAAGTTAGATTTCAACCAGCTCAAGGCCCTTCCTGAGGCAATTGGGAAGCTGGAATGGTTGGAGGTTCTCACCTTGCACTATAATAGGATTAAGAAATTGCCTTCCACAATGGGTAATCTATCCAATTTGAAGGAGCTTGATGTTAGCTTTAATGAACTTGAATTTGTACCGGAGAACCTGTGTTTTGCAACTAATTTGAAGAAATTAAACTTGGGAAAGAACTTTGCGGACCTAAGAGCCTTGCCAAGATCAATTGGAAACCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAGAGCTCTACCTGAGTCTTTCAGGTTATTGTCCAAGTTGAGAGTTTTTAGAGCTGATGAGACTCCCCTTGAGGTGCCACCAAGAGAATTGGTCAAGTTGGGTGCTCAGGAAGTTGTGCAGTATATGGCTGATTTTGTCATCAATAGGGATGCAAAACTTCTGCCATCAAAGAAGAAAAAGAGGGGATTTTGGTTCTGGCTTTGCTCCATATTTTACCCTAAGCTGAAATGA 1560 0.4263 MAMRPHGERDPPQPQQASSRAFLDTVQEITSIYRSLPPRPSIEEVEAATSTMDTVNTEEKIRLNEISMQEIPHHVPQDLFYVLQELRKTMVVFQSHQQRREALHLLQQEKMFQTFADLIQRASQFVSGDAQELKFPTLAQPHVAITDDTLVKKKEEDEPQKNDFEAVMGSSSAGDGSSEKLSLMKAATLIEICASNGAKSLELRGKLVDQMEWLPVSIGKLSDVTEMDLSENRIMALPTTIGALKALTKLDLHSNQLINLPQSFGELINLIDLDLHANRLRSLPPTFGNLTNLTGLDLSSNEFTELPETIGNLNSLKRLIVETNELEELPYTIGNCSSLSVLKLDFNQLKALPEAIGKLEWLEVLTLHYNRIKKLPSTMGNLSNLKELDVSFNELEFVPENLCFATNLKKLNLGKNFADLRALPRSIGNLEMLEELDISDDQIRALPESFRLLSKLRVFRADETPLEVPPRELVKLGAQEVVQYMADFVINRDAKLLPSKKKKRGFWFWLCSIFYPKLK* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0008 519 MobiDBLite consensus disorder prediction 155 175 - -
Apr3g0008 519 Pfam Leucine rich repeat 338 395 IPR001611 GO:0005515
Apr3g0008 519 Pfam Leucine rich repeat 269 326 IPR001611 GO:0005515
Apr3g0008 519 SMART LRR_typ_2 313 336 IPR003591 -
Apr3g0008 519 SMART LRR_typ_2 267 289 IPR003591 -
Apr3g0008 519 SMART LRR_typ_2 430 452 IPR003591 -
Apr3g0008 519 SMART LRR_typ_2 221 243 IPR003591 -
Apr3g0008 519 SMART LRR_typ_2 290 312 IPR003591 -
Apr3g0008 519 SMART LRR_typ_2 359 381 IPR003591 -
Apr3g0008 519 SMART LRR_typ_2 382 405 IPR003591 -
Apr3g0008 519 SMART LRR_typ_2 244 266 IPR003591 -
Apr3g0008 519 SMART LRR_typ_2 337 358 IPR003591 -
Apr3g0008 519 Gene3D Ribonuclease Inhibitor 179 488 IPR032675 -
Apr3g0008 519 SMART LRR_bac_2 382 401 - -
Apr3g0008 519 SMART LRR_bac_2 336 355 - -
Apr3g0008 519 SMART LRR_bac_2 290 309 - -
Apr3g0008 519 SMART LRR_bac_2 359 378 - -
Apr3g0008 519 SMART LRR_bac_2 244 263 - -
Apr3g0008 519 SMART LRR_bac_2 313 332 - -
Apr3g0008 519 SMART LRR_bac_2 430 449 - -
Apr3g0008 519 ProSiteProfiles Leucine-rich repeat profile. 292 313 IPR001611 GO:0005515
Apr3g0008 519 PANTHER LEUCINE-RICH REPEAT-CONTAINING 19 514 - -
Apr3g0008 519 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 5 19 514 - -
Apr3g0008 519 SUPERFAMILY L domain-like 192 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0008 Apr-Chr3 138211 140386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0008 220 467 Receptor kinase-like Gene Family AT2G15080 32.031 1.90e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0008 - - gmx:100798442 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0008 3 138211 140386 Apr3g0008 3 138211 140386 ECH