Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2610 ATGCGTATTTTAATTTCGACTTTGGCTGACGAGGCGGTTACCATGTCATCTCTCAGTAGGGAGTTGGTGTTCTTGATCTTGCAGTTTTTGGATGAAGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAGCAGGAGTCTGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAAGTTGAGAAGTACCTCTCTGGTTTCACAAAAGTAGATGATAATAGGTATTCTATGAAGATATTTTTCGAGATAAGGAAGCAGAAGTACCTGGAGGCATTGGATAAGCACGACCGGTCCAAGGCTGTAGAAATATTAGTGAAAGATTTGAAAGTCTTTGCCACGTTTAATGAAGAACTGTTCAAGGAAATCACACAGCTTTTGACCTTGGAGAATTTTAGGGAAAACGAACAGTTGTCTAAGTATGGTGATACGAAGTCTGCTAGAGCTATCATGTTGGTTGAACTCAAAAAATTGATTGAGGCAAATCCCTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAGCTTTGTAAGAATCCACGGCCAAATCCAGATATAAAAACACTTTTTGTTGATCACTCATGTGGACAACCAAATGGTGCACGGGCCCCTTCACCTGCTAATAGTCCGCTATTAGGATCATTACCAAAGGGTGGAGGATTTCCTCCTCTTGGTGCACATGGGCCTTTTCAACCTACTCCAACACCTGTGCCAACACCCCTAGCTGGTTGGATGTCAAATCCTACCACTGTAGCACATCCTGCAGTTTGTGGAGGAGGAGCTATAGGTCTTGGTGCACCATCAATCCCTGCTGCTTTGAAGCACCCTAGAACCCCTCCAGCAAATCCTTCTGTTGACTATCCATCTGGAGATTCAGATCATGTTTCTAAGAGAACAAGACCAATGGGAATGTCAGATGAGGTAAATCTACCTGTCAATGTCTTGTCGGCAACATTCCAAGGCCATGGTCATGGTCAGGCTTTTAATGCACCTGATGACTTGCCAAAGACTGTCATGCGAACTCTGAACCAAGGCTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAGACATTACTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAAGTGGGCTCTAGGGAGCAGTTGCTCTTGAGGAATTTCAAAGTTTGGGATCTTAGTGCTTGTTCCATGCCATTTCAGGCTGCTCTTGTCAAAGATCCAGGAGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGGGCTTTATTCGGAGTTGCTTACTCAAGGCACATTGTTCAGATATATTCTTACCATGGTGGGGATGATGTTCGACAGCATTTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTTTCCCACCCAAATAAGCAGCTATGTGTGATAACCTGCGGTGATGATAAGACCATTAAGGTTTGGGATGCTGCTACGGGGGCAAAGCTGTATACTTTTGAAGGTCATGAGGCTCCAGTTTATTCAGTCTGCCCACATTATAAAGAAAACATTCAGTTCATCTTTTCAACGGCATTAGATGGAAAGATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGCCATTGGTGTACAACCATGGCTTATAGTGCTGATGGAGCTAGACTCTTTTCATGTGGGACAAGTAAGGATGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGGAAACGATCTTTGGGTGTTGTACAATTTGATACAACCAAAAATCGATATTTGGCTGCTGGTGATGATTTCTCCATTAAATTCTGGGATATGGACAATATTCAGCTTTTGACAGCTGTCGATGCTGATGGTGCTCTCCCTGCAAGCCCACGGATCCGTTTTAATAAGGATGGAGCTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATCTTAGCCAATGCAGATGGTATTCGTTTATTGCGTACATTTGAGAATTCTTTATTTGATACATCAAGAACGCCGGAAGCCATGACGAAGCCTACAATAAATCCAATTTCAGCTGCTGCTGTAGCTGCAACTAGTGCTGCGCTTGCAGAGAGGGCCTCATCTGTGGTAGCTATTACTGGAGTGAATGGGGATGCCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGATAAATCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTACCAGAGAGTGTAAGAGTGAACAAGATATCAAGGTTGATATATACTAATTCAGGTAGTGCCATTCTCGCATTAGCTTCCAATGCCATTCATCTGCTCTGGAAATGGCAGCGCAGTGACCGAAATTCATCTGGCAAGGCCACTGCCAATGTGCAACCCCAATTGTGGCAACCTTCCAGTGGCATCCTGATGACTAATGACATTACTGATGGCAATACTGAGGATGCTGTTCCCTGCTTTGCTCTGTCTAAAAATGATTCTTATGTAATGTCAGCATCGGGAGGGAAGATTTCTCTGTTCAATATGATGACTTTTAAGACAATGACAACATTCATGCCTCCACCACCTGCAGCAACCTTTCTTGCTTTCCATCCTCAAGATAACAATATTATTGCTATAGGCATGGATGATTCTTCTATTCAGATATATAATGTTCGTGTAGATGAGGTTAAAAGTAAACTCAAAGGTCATACTAAAAGAATAACTGGTCTTGCTTTTTCTCATGCATTGAATGTGCTAGTTTCATCTGGAGCAGATGCTCAGCTTTGTGTGTGGAATATTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAACTTCCTGCTGGGAGGACACCTTCACAGGCAGATACCCGGGTACAATTTCATCAGGATCAGTTCCGCTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAATGTTTAAAGCAGTGGTTCCCACGAGATTCTGCTGCACCAATATCACATGCAACTTTCTCATGTGATAGCCAGCTCATATATGCCAGTTTTTTAGATGCAACAGTCTGTGTATTTAGTGCTTCAAACCTTCGATTATGTTGTCGAATCAATCCGTCTGCTTATCTTTCTGCGAGTGTCAGTTCTAATGTACAACCTCTGGTTATTGCTGCACATCCTCAAGAGCCAAATCAGCTTGCTGTAGGACTGTCGGATGGTGGAGTTCATGTCTTTGAGCCCCTTGATTCTGAAGGCAAGTGGGGTGTGCCTCCACCCATTGAGAATGGCTCAACAAGCAATGTGGCAGCTACTTCAGTTGGAGCTTCTTCTGATGAAGCCCAGAGATGA 3441 0.4269 MRILISTLADEAVTMSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKGGGFPPLGAHGPFQPTPTPVPTPLAGWMSNPTTVAHPAVCGGGAIGLGAPSIPAALKHPRTPPANPSVDYPSGDSDHVSKRTRPMGMSDEVNLPVNVLSATFQGHGHGQAFNAPDDLPKTVMRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSREQLLLRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKLYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGHWCTTMAYSADGARLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTAVDADGALPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTFENSLFDTSRTPEAMTKPTINPISAAAVAATSAALAERASSVVAITGVNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPESVRVNKISRLIYTNSGSAILALASNAIHLLWKWQRSDRNSSGKATANVQPQLWQPSSGILMTNDITDGNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHALNVLVSSGADAQLCVWNIDGWEKQKSRFLQLPAGRTPSQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDSAAPISHATFSCDSQLIYASFLDATVCVFSASNLRLCCRINPSAYLSASVSSNVQPLVIAAHPQEPNQLAVGLSDGGVHVFEPLDSEGKWGVPPPIENGSTSNVAATSVGASSDEAQR* 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2610 1146 Gene3D - 560 704 IPR015943 GO:0005515
Apr2g2610 1146 SUPERFAMILY TolB, C-terminal domain 360 606 - -
Apr2g2610 1146 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 106 IPR006595 -
Apr2g2610 1146 MobiDBLite consensus disorder prediction 1124 1146 - -
Apr2g2610 1146 SMART WD40_4 884 924 IPR001680 GO:0005515
Apr2g2610 1146 SMART WD40_4 1071 1110 IPR001680 GO:0005515
Apr2g2610 1146 SMART WD40_4 552 595 IPR001680 GO:0005515
Apr2g2610 1146 SMART WD40_4 358 397 IPR001680 GO:0005515
Apr2g2610 1146 SMART WD40_4 1017 1058 IPR001680 GO:0005515
Apr2g2610 1146 SMART WD40_4 927 966 IPR001680 GO:0005515
Apr2g2610 1146 SMART WD40_4 464 505 IPR001680 GO:0005515
Apr2g2610 1146 SMART WD40_4 598 638 IPR001680 GO:0005515
Apr2g2610 1146 SMART WD40_4 508 549 IPR001680 GO:0005515
Apr2g2610 1146 SMART WD40_4 839 881 IPR001680 GO:0005515
Apr2g2610 1146 SMART WD40_4 419 458 IPR001680 GO:0005515
Apr2g2610 1146 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 514 IPR001680 GO:0005515
Apr2g2610 1146 ProSiteProfiles LIS1 homology (LisH) motif profile. 18 50 IPR006594 GO:0005515
Apr2g2610 1146 ProSitePatterns Trp-Asp (WD) repeats signature. 953 967 IPR019775 -
Apr2g2610 1146 Pfam WD domain, G-beta repeat 471 505 IPR001680 GO:0005515
Apr2g2610 1146 Pfam WD domain, G-beta repeat 933 966 IPR001680 GO:0005515
Apr2g2610 1146 PANTHER TOPLESS-LIKE PROTEIN 15 1146 - -
Apr2g2610 1146 MobiDBLite consensus disorder prediction 1116 1146 - -
Apr2g2610 1146 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 536 1115 IPR011047 -
Apr2g2610 1146 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 934 968 - -
Apr2g2610 1146 MobiDBLite consensus disorder prediction 299 320 - -
Apr2g2610 1146 ProSitePatterns Trp-Asp (WD) repeats signature. 492 506 IPR019775 -
Apr2g2610 1146 SMART ctlh 48 106 IPR006595 -
Apr2g2610 1146 ProSiteProfiles Trp-Asp (WD) repeats profile. 934 975 IPR001680 GO:0005515
Apr2g2610 1146 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 15 1146 IPR027728 GO:0006355
Apr2g2610 1146 SMART Lish 18 50 IPR006594 GO:0005515
Apr2g2610 1146 Gene3D - 848 1136 IPR015943 GO:0005515
Apr2g2610 1146 Gene3D - 328 559 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2610 Apr-Chr2 30016084 30025098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2610 469 682 Miscellaneous Gene Families AT5G08390 22.936 3.45e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2610 - - gmx:100790282 2140.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2610 2 30016084 30025098 Apr2g2610 2 30016084 30025098 ECH