Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2549 ATGAAGAAGCAATCTTGTGAAGAATCAGAGACCAGTTTCCCAGAGAAATGTGTAAGCCAATTATCCTCGGAGTGCTGGTTCGACGATGCATGCATCCTTGACATGGATTACTTCGTGAAGACCCTTTCAGGCATCAAACAGAAAGGTGTGCGTGCTGACTTGATCGGTTCCATCATCACTCACTATGCTTCCAAGTGGCTCCCTGATCTTTCTGCGGCTGAAAATGGCCTCACCCATTTCCATGAATCACCCGAAAGTGTCACAATATCATGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTGGGTGTTCTTCCTCCAGAGAAGGATTCCATCCCATGCAACTTCCTCCTTCGTCTTCTAAGAACTGCTAACATGGTTGGTGTTGAGGCCACTTATAGAGTTGAGCTTGAGAAGCGCATTTCATGGCAGCTAGATCAAGCTTCTCTCAAAGAGCTCATGATACCCTCTTTCAGCCACACTTGTGGGACCCTCTTGGATGTTGAGCTTGTCCTTAGGCTGGTTAAGAGGTTCGTGAGTTTGGACCATGATGGAGCTAAAACTGGTGTTGCTTTGGTTAAGGTGGCCAAGTTGGTTGATTGCTACCTCGCCGAGGCTGCTGTGGATGCCAACTTGAGTTTATCTGAGTTTGTTGCACTTGCTGGAGCTCTTCCATGCCATGCAAGAGCAACCGATGATGGCTTGTACCGAGCCATTGACACTTACTTAAAAGCACATCCAGGAGTGTTAAAACAAGAAAGGAAGGGTCTGTGTAGGCTGATTGATAGCAGGAAACTCACACCGGAGGCCTCACTTCATGCAGCTCAAAATGAAAGGTTACCTGTTAGAGCTGTGATTCAGGTGCTCTTCTCTGAACAAACCAAACTCAATCGCCACATAGATTGGAGTGGCTCCTTCAGTGGCTTGAGGAGCCCAAATAGTGGCCTTGATCCACCAATACGATGCCTTTCAAAGCGTGAAATGAATGCTCAACAAATGGAGATAAGGAGGCTGAAGGAAGATGTTCACAGGCTGCAAAATCAGTGCAATGCTATGCAAGTTCAGATGGAGAGAATGATGGAGAAGAAGAAATGGTTATTCAAATGGAAGAAATTTGGAATGCCTGTGTTTAGTAAAAGTTGGGGAGAGGTGGAGAAAATCCAAGAAGAAGAAGAAGAAGAAGATGATGATGAACAGGCTGAAAGGGAAGTTGGGTTTGGAAGGCAAACGCCCATGTACATGAAAACCGGTCTGGTCAAAAGTAGGACTCCCTACAAGTGGAGGAAATCTTTGTCCTGA 1299 0.4604 MKKQSCEESETSFPEKCVSQLSSECWFDDACILDMDYFVKTLSGIKQKGVRADLIGSIITHYASKWLPDLSAAENGLTHFHESPESVTISWMKKRFFVETLVGVLPPEKDSIPCNFLLRLLRTANMVGVEATYRVELEKRISWQLDQASLKELMIPSFSHTCGTLLDVELVLRLVKRFVSLDHDGAKTGVALVKVAKLVDCYLAEAAVDANLSLSEFVALAGALPCHARATDDGLYRAIDTYLKAHPGVLKQERKGLCRLIDSRKLTPEASLHAAQNERLPVRAVIQVLFSEQTKLNRHIDWSGSFSGLRSPNSGLDPPIRCLSKREMNAQQMEIRRLKEDVHRLQNQCNAMQVQMERMMEKKKWLFKWKKFGMPVFSKSWGEVEKIQEEEEEEDDDEQAEREVGFGRQTPMYMKTGLVKSRTPYKWRKSLS* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2549 432 PANTHER OS12G0117600 PROTEIN 4 432 IPR043454 -
Apr2g2549 432 Coils Coil 328 362 - -
Apr2g2549 432 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 4 432 - -
Apr2g2549 432 MobiDBLite consensus disorder prediction 387 417 - -
Apr2g2549 432 ProSiteProfiles NPH3 domain profile. 24 295 IPR027356 -
Apr2g2549 432 Pfam NPH3 family 25 271 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2549 Apr-Chr2 29670564 29673143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2549 23 296 EF-hand Containing Proteins AT3G44820 35.430 2.46e-50 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2549 - - gmx:100777820 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2549 2 29670564 29673143 Apr2g2549 2 29670564 29673143 ECH
Apr2g2549 2 29670564 29673143 Apr2g2549 2 29670564 29673143 PCT