Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2467 ATGAGGTTACTAAGAACGATCCTCATCACCCACAAACTCCACCTCCGCAACCCTAAACGCATTTTTTCATCTGTCGTTTCCCACCGCTACTCTTCCGCAACCCCAGATTCTGATGAAACCCACAACACAAGGAACCAACCCACTAACGGTTGGAGCAGTTATGGAAACGTCTTCGACACCCTAGTTGCGCACCATAGCGACGAAGGCGAACTTGAAGAGGAAAACCCTAGAGGGAGGGCGCTGAGCCTGAAGACGGCAGCGGGTACGAAGAAAAAGGGGAAGCTGAAAACTAATTGGGTTTGCTACCATTGTGGGTACAGTGCAGGGCAATGGTGGGGAACATGCCCCTCATGTAACTTAGCTGGAACCATGAAAGAGTTTAGCGAAAGCAAATTAAGTGATGCTGATAATAATAAGGCCAGAGGTGGATTAACCGTTTCCGAGGATGCAGTAGGGTTGTGGCTCCCACAACGAGCCGATGAGTTGCGCCCCGTTAAATTGGATGAGGTTAATCGTCGATTCGATTACCGCCACTTGAGAATTCCTTTCTCTGGTCCTTTTGGAAATGAAGTTTCTACAGTGCTTGGTGGAGGTCTTGTACCAGGATCTATGATTTTAGTTGGCGGTGACCCTGGTATTGGAAAGAGTACTCTGCTGTTGCAGATTGCAGCAATGATAGCAGAAGAATGCAATGATGGCGATGATTCTTCAGTTCTATATGTCTCTGGTGAAGAGAGCCTTCAACAAATTGGCATTAGAGCTGATCGCCTTGGGATTAAATCTAATGTTTTTTTGTATTCAAGTACTGATATTGAGGACATATTGAACAAAGCTAACAGTCTCTCCCCTCGTGCTTTGGTTGTTGATTCAATACAAACTACTTACCTGAAAACAATACTGGGAAGCGCCGGAGGGGTTATGCAGGTGAAAGAATGTACTACAGCTCTGATGCGATTTGCAAAAATGACTAACATCTCAGTTTTTTTGATTGGACATGTGACCAAATCTGGAGACATAGCGGGACCTCGTGTCTTGGAGCATATCGTTGATGCTGTTTTGTATATGGAAGGCGAGAGGTGCTCTCCATATCGTATGCTTCGATCTGTGAAAAATCGGTTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACAGTCAGGACTCCGGCCTGTTTCAAATGCCAGTGAAATGTTTCTCACTGAACAACACACTGATTCAATTGTTTTAGCTGGGCTTGCTATTGCTGTAATAATGGATGGTTCAAGAACTTTTTTAATTGAAATTCAGGCACTTTGCCTTTCACAGTGCCCAGTACCAGCTTCAAGTTCAGGGCTAGTTAATGGGATCCAGGCAAACAAAGCTAATATGATTAAATGTGTTCTTATGAAGCAAGCAGGTCTTCAGCTCCAAGAAAATGCTGTGTTTTTGAATGTTGTTAGTGGACTGACAGTGACAGAGACTGCTGGAGATCTTGCTATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCCATTCCAAAGGGGGTTGCATTCATTGGTGAAATTGGCCTTGGTGGAGAGCTTCGCATGGTTCCTAGAATTGATAAAAGGGTATACACGTTGGCAAAGTTGGGTTACAAAAAGTGTGTAGTCCCGAAGCAAGCTGAGAAATTTTTGAAAACTGAAGGTCTGGAAAACATGGAAGTTGTAGGTTGCCAGAATCTGAAAGAGGTTATTGACGCTGTTTTCAGAAGATAA 1743 0.4429 MRLLRTILITHKLHLRNPKRIFSSVVSHRYSSATPDSDETHNTRNQPTNGWSSYGNVFDTLVAHHSDEGELEEENPRGRALSLKTAAGTKKKGKLKTNWVCYHCGYSAGQWWGTCPSCNLAGTMKEFSESKLSDADNNKARGGLTVSEDAVGLWLPQRADELRPVKLDEVNRRFDYRHLRIPFSGPFGNEVSTVLGGGLVPGSMILVGGDPGIGKSTLLLQIAAMIAEECNDGDDSSVLYVSGEESLQQIGIRADRLGIKSNVFLYSSTDIEDILNKANSLSPRALVVDSIQTTYLKTILGSAGGVMQVKECTTALMRFAKMTNISVFLIGHVTKSGDIAGPRVLEHIVDAVLYMEGERCSPYRMLRSVKNRFGSTDELGVFEMSQSGLRPVSNASEMFLTEQHTDSIVLAGLAIAVIMDGSRTFLIEIQALCLSQCPVPASSSGLVNGIQANKANMIKCVLMKQAGLQLQENAVFLNVVSGLTVTETAGDLAIAAAICSSFLEFPIPKGVAFIGEIGLGGELRMVPRIDKRVYTLAKLGYKKCVVPKQAEKFLKTEGLENMEVVGCQNLKEVIDAVFRR* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2467 580 SUPERFAMILY Ribosomal protein S5 domain 2-like 370 578 IPR020568 -
Apr2g2467 580 Pfam AAA domain 193 337 - -
Apr2g2467 580 MobiDBLite consensus disorder prediction 31 51 - -
Apr2g2467 580 Pfam Subunit ChlI of Mg-chelatase 463 549 - -
Apr2g2467 580 Gene3D - 190 390 IPR027417 -
Apr2g2467 580 ProSiteProfiles RecA family profile 1. 180 333 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Apr2g2467 580 PANTHER DNA REPAIR-LIKE PROTEINRADA 1 580 - -
Apr2g2467 580 PANTHER DNA REPAIR PROTEIN RADA 1 580 - -
Apr2g2467 580 PRINTS DNA repair protein radA signature 101 125 - -
Apr2g2467 580 PRINTS DNA repair protein radA signature 193 221 - -
Apr2g2467 580 PRINTS DNA repair protein radA signature 289 313 - -
Apr2g2467 580 PRINTS DNA repair protein radA signature 328 356 - -
Apr2g2467 580 PRINTS DNA repair protein radA signature 363 389 - -
Apr2g2467 580 PRINTS DNA repair protein radA signature 442 465 - -
Apr2g2467 580 SMART AAA_5 201 359 IPR003593 -
Apr2g2467 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 384 IPR027417 -
Apr2g2467 580 TIGRFAM sms: DNA repair protein RadA 94 572 IPR004504 GO:0003684|GO:0005524|GO:0006281
Apr2g2467 580 Gene3D - 409 580 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2467 Apr-Chr2 29093557 29101754 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2467 K04485 - gmx:100791181 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2467 2 29093557 29101754 Apr2g2467 2 29093557 29101754 ECH
Apr2g2467 2 29093557 29101754 Apr2g2467 2 29093557 29101754 PCT