Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2450 ATGAATGGTGGCGATGAGGTCGTCGCAGCTCCGGCGGGTCCACCGCACCCTCTGGAGTGGAAATTCTCGCAGGTGTTCGGGGAACGTACGGCTGGGGAAGAGGTTCAGGAAGGATGGGTTAGATCTTCATTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTGGTTCTCTTTGAGAGAACTGATACAAAAGATCATGGAGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATCAGTAGGCATCCTGAATTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTCAAGAGCTTGGAGATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCCTCTTTCTTCTTTCAACAAATGATAAAACTATCAAATTTTGGAAGGTGCAAGAGAAGAAGGTCAAGAAAATTTCTGAGATGAATGTTGACCCTTCAAAATCAATGGGAAATGGCTGTATTGCTAGTTCAAGTAATTCAAGTAGTTCTAGGCCATATCTTGCAAATGGAGGATCACCAGATAGGTCATACAATTATCTAAACAATGACTTCTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTAGTAAGTAGCCACGAGACCAGCTTAGTGGCTCGATGTCGTAGAGTGTATGCCCATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGTGAAACTTTCATATCAGCCGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAGTTTCACCCTACACATTGTAATATGTTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCGGGCTCCAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAGTTTGGGAAGGATGGAAGATACATACTTAGTCGTGATTACATGACTTTAAAGTTATGGGACATCAATATGGATACAGGCCCCGTTTCAACTTTCCAGGTTCATGAGTATTTAAGACCTAAGCTTTGTGATTTATATGAAAATGACTCAATTTTTGATAAGTTTGAGTGTTGTCTGAGTGGGGATGGATTGCGCTTAGCAACTGGTTCTTACAGCAATCTATTCCGGGTGTTTGGTTGTGCTCCTGGAAGTGCTGAGGCTACAACTTTAGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACTCCTTCAAGGCCTTCTAGATCACTGGGAAATAGTATAACACGTGTTGTAAGGCGGGGAGCAGACACCCCTGGGGTGGATGCTAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCAACCGAAAATTCAATTGCTTGTGCCGCTGCAAATAGCTTGTACATGTACTACGCGTAA 1569 0.4181 MNGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEGWVRSSLDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGCIASSSNSSSSRPYLANGGSPDRSYNYLNNDFSFPPGGIPSLRLPMVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDTGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRLATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGADTPGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2450 522 MobiDBLite consensus disorder prediction 171 191 - -
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 51 71 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 98 126 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 127 155 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 241 268 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 269 296 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 297 325 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 326 353 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 354 381 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 382 407 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 408 434 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 491 520 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 239 253 IPR018067 -
Apr2g2450 522 Pfam WD domain, G-beta repeat 233 269 IPR001680 GO:0005515
Apr2g2450 522 Gene3D - 82 520 IPR015943 GO:0005515
Apr2g2450 522 SUPERFAMILY WD40 repeat-like 45 514 IPR036322 GO:0005515
Apr2g2450 522 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 522 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 SMART WD40_4 280 320 IPR001680 GO:0005515
Apr2g2450 522 SMART WD40_4 37 72 IPR001680 GO:0005515
Apr2g2450 522 SMART WD40_4 339 377 IPR001680 GO:0005515
Apr2g2450 522 SMART WD40_4 230 269 IPR001680 GO:0005515
Apr2g2450 522 SMART WD40_4 111 151 IPR001680 GO:0005515
Apr2g2450 522 SMART WD40_4 404 435 IPR001680 GO:0005515
Apr2g2450 522 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 522 - -
Apr2g2450 522 PIRSF PPA2_B55 12 522 IPR000009 GO:0000159|GO:0019888
Apr2g2450 522 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 111 125 IPR018067 -
Apr2g2450 522 MobiDBLite consensus disorder prediction 450 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2450 Apr-Chr2 28982973 28990731 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2450 K04354 - gmx:100799449 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2450 2 28982973 28990731 Apr2g2450 2 28982973 28990731 ECH
Apr2g2450 2 28982973 28990731 Apr2g2450 2 28982973 28990731 PCT