Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2438 ATGGTCATGGGCTTCAAGCTCATAATGTGGAATGTGCTACTGCTTGTGGCTTGTTCTCTGACTTGTTCTGTCACAGCCTCAGTGTCCTATGATTCAAAGGCTATCACCATTAATGGCCAGAGAAGGATCCTCATTTCTGGATCCATTCATTACCCAAGAAGCACCCCCGAGATGTGGCCAGATCTTATTCAGAAGGCCAAGGATGGAGGTTTGGATGTGATTCAGACTTATGTTTTCTGGAATGGCCACGAACCTTCACCTGATAAATATTATTTTGAGGGGAACTATGATCTGGTGAAGTTCATAAAGTTGGTGCAGCAAGCAGGCCTATATGTTCATCTCAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGCGGTTTCCCGGTTTGGTTGAAGTACATTCCAGGAATCAGCTTCAGAACAGACAATGGCCCATTTAAGTTTCAAATGCAAAAATTTACCAAGAAGATTGTCGATATGATGAAAGCAGAGAGGTTATATGAGTCTCAGGGAGGTCCAATAATTCTATCCCAGATTGAAAATGAATATGGACCTATGGAGTATGAAATTGGTGCTCCCGGTAAAGCATACACTAATTGGGCAGCAGATATGGCTATAGGACTTGGTACGGGTGTTCCATGGGTTATGTGCAAGCAAGATGATGCTCCTGATCCTGTTATTAACACTTGCAATGGCTTCTATTGTGATTACTTCTCTCCAAATAAGGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTCCTGTTCCTCATCGACCTGCTGAGGACTTGGCATTTTCAGTTGCAAGGTTTATACAGAAAGGGGGGTCATTTGTAAATTATTACATGTATCATGGGGGAACAAATTTTGGTCGAACTGCTGGTGGGCCCTTTATTGCTACAAGCTATGATTATGATGCGCCTATTGATGAATACGGATTGCCCAGACAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTCTCTGAACCAGCCTTAGTATCAGGAGATCCTACTGTAACAAAGATTGGAAGTTATCAAGAGGCTCATGTTTTTAAATCAAAAGCAGGAGCGTGTGCTGCATTCCTTGCAAACTATAACCCAAAATCTTATGCAACAGTGGCATTTGGAAGCATGCATTACAACTTGCCTCCTTGGTCTATAAGTATTCTTCCTGACTGCAAGAACACAGTTTATAACACTGCAAGGATTGGTTCCCAGAGTGCCCAGATGAAGATGACTCGTGTTCCTATTCATGGCGGGCTCTCTTGGCAGGCATTCAATGAACAAACAACCTCTACTGAGGATAGTTCTTTCACCATGACTGGCCTGCTGGAACAGTTAAATACAACAAGGGATTTATCTGACTACCTGTGGTACTCCACAGATGTTGTGATTGATCCCAATGAAGGATTTTTGAGAAATGGAAAGGATCCTGTCCTAACAGTTCTATCTGCTGGGCATGCTTTGCATGTTTTTGTGAATGGTCAGCTATCAGGAACTGTATATGGAAGCTTAGAATTCCCTAAACTAACATTTAGCGAGAGTGTGAAGCTCAGAGCTGGTGTTAACAAGATCTCTCTTCTAAGTGTTGCAGTTGGACTCCCAAATGTTGGTCCTCATTTTGAAACATGGAATGCTGGTGTTCTTGGCCCAATTGCATTAAATGGTCTCAATGAGGGGAGAAGGGACTTGTCATGGCAGAAATGGTCTTACAAGGTTGGTCTTGAAGGTGAAGCTTTGAGCCTTCATTCTCTCAGTGGAAGTTCCCCAGTCGAGTGGATTCAGGGATCTTTAGTTTCTCGAATGCAGCCATTGACTTGGTACAGAACAACTTTTGACGCTCCAGCCGGGACTGCACCGTTTGCTTTAGACATGAACAGCATGGGCAAAGGTCAAGTGTGGTTAAATGGACAGAATCTTGGGCGCTACTGGCCTGCTTATAAAGCAACTGGTACATGTGATTACTGTGACTATGCTGGAACTTACAATGAGAATAAATGCAGAAGTAACTGTGGTGAAGCTTCTCAAAGATGGTACCATGTTCCTCATTCATGGCTGAAGCCAACTGGAAATTTATTGGTTGTGTTTGAAGAACTAGGTGGAGATCCCAACGGAATCTTTTTGGTTAGAAGGGATATAGATAGTGTATGCGCTGATATTTATGAGTGGCAGCCAAATCTTATAAGCTATCAGATGCAAGCTTCTGGAAAATCTAGCAAACCTGTGAGACCAAAAGTTCATTTGTCATGTGGCCCTGGACAGAAAATCTCATCAATCAAGTTTGCTAGCTTTGGTACTCCAGTAGGGTCGTGTGGAAACTTCCATGAAGGAAGCTGTCATGCTCACAAGTCATATGATGCATTTGAAAGGAATTGTGTTGGACAGAATTGGTGCACAGTAACAGTGTCACCTGACAATTTTGGAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAGGCCATATGTACCTGA 2526 0.4311 MVMGFKLIMWNVLLLVACSLTCSVTASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPDKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQKFTKKIVDMMKAERLYESQGGPIILSQIENEYGPMEYEIGAPGKAYTNWAADMAIGLGTGVPWVMCKQDDAPDPVINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPHRPAEDLAFSVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGLPRQPKWGHLKDLHRAIKLSEPALVSGDPTVTKIGSYQEAHVFKSKAGACAAFLANYNPKSYATVAFGSMHYNLPPWSISILPDCKNTVYNTARIGSQSAQMKMTRVPIHGGLSWQAFNEQTTSTEDSSFTMTGLLEQLNTTRDLSDYLWYSTDVVIDPNEGFLRNGKDPVLTVLSAGHALHVFVNGQLSGTVYGSLEFPKLTFSESVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPIALNGLNEGRRDLSWQKWSYKVGLEGEALSLHSLSGSSPVEWIQGSLVSRMQPLTWYRTTFDAPAGTAPFALDMNSMGKGQVWLNGQNLGRYWPAYKATGTCDYCDYAGTYNENKCRSNCGEASQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLISYQMQASGKSSKPVRPKVHLSCGPGQKISSIKFASFGTPVGSCGNFHEGSCHAHKSYDAFERNCVGQNWCTVTVSPDNFGGDPCPNVMKKLSVEAICT* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2438 841 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Apr2g2438 841 SUPERFAMILY Galactose-binding domain-like 582 747 IPR008979 -
Apr2g2438 841 PANTHER BETA-GALACTOSIDASE RELATED 12 835 IPR001944 GO:0004553|GO:0005975
Apr2g2438 841 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Apr2g2438 841 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Apr2g2438 841 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Apr2g2438 841 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Apr2g2438 841 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Apr2g2438 841 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Apr2g2438 841 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Apr2g2438 841 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Apr2g2438 841 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Apr2g2438 841 ProSiteProfiles SUEL-type lectin domain profile. 755 841 IPR000922 GO:0030246
Apr2g2438 841 Gene3D - 439 585 - -
Apr2g2438 841 Gene3D - 606 732 - -
Apr2g2438 841 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Apr2g2438 841 SUPERFAMILY (Trans)glycosidases 28 343 IPR017853 -
Apr2g2438 841 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Apr2g2438 841 PANTHER BETA-GALACTOSIDASE 12 835 - -
Apr2g2438 841 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Apr2g2438 841 SUPERFAMILY Galactose-binding domain-like 402 573 IPR008979 -
Apr2g2438 841 Gene3D Glycosidases 21 344 - -
Apr2g2438 841 Gene3D - 751 841 IPR043159 -
Apr2g2438 841 Pfam Galactose binding lectin domain 763 840 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2438 Apr-Chr2 28897768 28904515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2438 9 841 Glycoside Hydrolase AT3G13750 79.762 0.0 1440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2438 - - gmx:100811187 1653.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2438 2 28897768 28904515 Apr2g2438 2 28897768 28904515 ECH
Apr2g2438 2 28897768 28904515 Apr2g2438 2 28897768 28904515 PCT