Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2407 ATGGAAGAAGAGGAAGACGTGTCGCCACCCTTTTGGCTGCAAAACGGCGGCGCCGACAGCCGTCTCTGCCGCTCATACTCGCTGTTTCTCAGCTCCGGTGCACTTCTCGTATGCCTTGTGGTGGTTGCACTTGCATTCACCTTGATCATTGTTCCTACATTGCACTCTTTCATTTCCCACGTTTTCAAACCCCACTCCGTGAAGAAGAGTTGGGACTCCCTCAACTTCGTGCTTGTTCTCTTCGCCATACTATGTGGTTTCCTCAGCAGGAACACCAACGATAACGAAACCCCACGTTCCTACGACACGACACAAGAGTACGAGAAACCCAACTCGGAAACTCCACGATCATGGTACCACTACTCGGATCAAAATCCATCGTATAAATCCTACAGCCGGTTGAGGAGTTTCAACTCCTACCCGGATCTCCGGCAAGAGTCGCCGTGGCTCGCCGCAGATGAACGGTGGCGATTTTACGACGATACCCACGTTAACGGTTACCGGAAGCAGAGACCGGAGGCCAGAGAAGAAGAAGAAGAAGAAGAGGGTGTTAAGAACATAGAAGTGGACGTAGCAAAGGATGTTCCCACTGCGCCGCTACGACCGGCGTCGACACCGCCAGCTACGACGGAGAAGAGGAGGAGTGGGGAACATAAGAATAGAAGAGCAAGTGCAAGTGCAACAACTAAAGAGTTTTTGGCATCGTTGAAGGGAAAGAAGAAGAAACACAGACACAGAAGCGTTGAAAATTTTCAAACCATTCAAAATTCTGAATTTTCTACTCTGCCTTCACACCCTCCACCGCCACCGCCTCCGCCTCCGCCGCCGTCATCAGTATTTCACAACGTGTTTTCTTCCAAGAAAAACAAGCACAAGAAACTTAACTCTGCTTCGCCGCAGCCACGTGATCATGTTTCATCCATGCGTGTATCCAAAACCGAACCGTTTCATGGGGGTGTGGCTACCCTTAAACCCCGGTTATCAAATAAGAGAGAGGAATTAGATGCCTTGGAAGAAAATGTGATTACTACTGGTAATGAGTCACCTTTGATCCCGATTCCGCCACCTCCGCCGCCGCCGCCGTTCAAAATGCCGGCGTGGAAGTTCCGGGTGCAGGGTGATTTTGTTAGAATAGATAGCATTAGTAGCTCGAGTAGTGGTTCGCCAGATTTAGATGATGAAATTGTGGAGTCACCAACGGGTGAAGATGATGGAGAACCTGCAATTCTATTGTTGTATCCTAGTTCTGATGTTGATACCAAAGCTGATACTTTTATTGAAAGGTTCAGAGCTAGTTTAAGGATGGAAAAGCAGGGGATAGGAAGGTCTAAATCCAATCTATGTCCTCCATCGAAACCGGAAACCAAATAA 1371 0.4865 MEEEEDVSPPFWLQNGGADSRLCRSYSLFLSSGALLVCLVVVALAFTLIIVPTLHSFISHVFKPHSVKKSWDSLNFVLVLFAILCGFLSRNTNDNETPRSYDTTQEYEKPNSETPRSWYHYSDQNPSYKSYSRLRSFNSYPDLRQESPWLAADERWRFYDDTHVNGYRKQRPEAREEEEEEEGVKNIEVDVAKDVPTAPLRPASTPPATTEKRRSGEHKNRRASASATTKEFLASLKGKKKKHRHRSVENFQTIQNSEFSTLPSHPPPPPPPPPPPSSVFHNVFSSKKNKHKKLNSASPQPRDHVSSMRVSKTEPFHGGVATLKPRLSNKREELDALEENVITTGNESPLIPIPPPPPPPPFKMPAWKFRVQGDFVRIDSISSSSSGSPDLDDEIVESPTGEDDGEPAILLLYPSSDVDTKADTFIERFRASLRMEKQGIGRSKSNLCPPSKPETK* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2407 456 Coils Coil 320 347 - -
Apr2g2407 456 PANTHER COTTON FIBER (DUF761) 1 118 - -
Apr2g2407 456 PANTHER COTTON FIBER (DUF761) 202 448 - -
Apr2g2407 456 PANTHER COTTON FIBER (DUF761) 123 197 - -
Apr2g2407 456 MobiDBLite consensus disorder prediction 437 456 - -
Apr2g2407 456 MobiDBLite consensus disorder prediction 349 364 - -
Apr2g2407 456 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 118 - -
Apr2g2407 456 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 123 197 - -
Apr2g2407 456 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 202 448 - -
Apr2g2407 456 MobiDBLite consensus disorder prediction 211 225 - -
Apr2g2407 456 MobiDBLite consensus disorder prediction 167 364 - -
Apr2g2407 456 MobiDBLite consensus disorder prediction 262 279 - -
Apr2g2407 456 MobiDBLite consensus disorder prediction 378 408 - -
Apr2g2407 456 Pfam Cotton fibre expressed protein 417 438 IPR008480 -
Apr2g2407 456 MobiDBLite consensus disorder prediction 95 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2407 Apr-Chr2 28698679 28700049 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2407 - - aprc:113855989 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2407 2 28698679 28700049 Apr10g1036 10 22747120 22749225 PCT