Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2404 ATGAATTTGCAACAACCTGGGCAGCCAAAATCCTCTAATGGATATGGCCGCCGAAAATCTGAAAGAGAAGGGGCAACTAAGTCAGAGAATAAGATCCTGTCTGGAAAATTAAATGCCAGCAGATTGACAAGTACAGGTGCAGTGACTGGCAGTAAATGTGGTAGTTATGAGAGTCCTTCACATGATCGACTAGTATATGTAACAACATGTCTCATTGGGCACCAGGTGAAAGTCCAGGTGAAAAACGGATCTATATACTCTGGAATATTTCATGCAACAAATGCGGACAAAGATTTTGGAATCATTTTGAAAATGGCTCACTTAACAAAGGATGGTTCTTTACGAGGGCAAAAATCTGGTGCTGAATTTGTAAGCAAGCCCCCTTCAAAGATTTTAATTATTCCTGCCAAAGAACTTGTACAAGTTATAGCACAGGATGTTGCTATTACAAGGGACGGCTTACCCGATGATTCTCACAATGATATGCATCAGGAAATCATGGTTGATTCGTTGATATCTCAATCTCGTCACGTTGAGCAAGGGAGAGAATTAAAACCTTGGGTACCAGATGAAGATGATCCACAATACCCTGAACTGGAAAACATATTTGACGTCCCTTGGAATAGGGGATGGAATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTAAAAAGCACGTTCAATGAGGAACTCTATACAACAAAGCTTGAAAAGGGGCCTCAGACAAGAGAATTGGAAAAGCAAGCTTTAAGAATAGCTAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCAGAGGAACGAGGCCTTCACTCATATGACGATTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTGTAGGGGTAAGCATGTTGATGACAGTGGATATGATGAAAATGAGGACATAGTGTTTGATTCACACAATTCTGAAACTTTTGGTGGTACATTTGGTTCGGTCACTAAGAGGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGACGGAACTCAAACATCGGCTAATTCCTCCTCCATGTCAAGTACTGGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCAAAGCAGTTAGCATCCGAACTCCCTGCCAAAAGCTACTCCTCATCTGATGGGGAAAGCAGGATTCAAGAGAACTCAATTAGTAATCAACATGGAGCCAATGGTAGTACCGAAGAAGAAAATCTGATTCAAGCTGAGGATGTTCAACTGTCAAAACCTGAGGATTCACAGGCACCACTCTACTTGAAGAAGGATGTCTCTGATAAAGGGGTATTATCTCCTAATGCCAGCTCCTATGCCCCTTCATCTGACACATCATCAAAAATTAATGAGAAGACTGGATCACATGGAGATTTGACTGAGATTTCAGCATGTGGCAAAGATAATGGGGAAACAAAATCTGTAAATTCACGTGGAACACCATCTGGGTCAGAATCAGTTGGAGGTGTGACAGCTTCTGGTCCTGGTTTATCTCCAAGTTCATCAGTTGGTTCATTGTCTTCTGAAAAATCAACTCTTAATCCCAATGCAAAGGAATTCAAGCTCAACCCTAATGCAAAGAGTTTTATTCCATCACCTGCTCGGCCTCCCACTCCAGTGTCTGATAGTTCCTTCTATATTCCAGCTAATGTAACTACTGTACCAAATATGCCAGGCATGCCCATGGGTATTGGAATTGGACCAACTTTTACTGGGCCACAGCCTATCATGTATAATCCTCAAGTAGCACAAATGCCATCTCAAGCATATTTTCATCCGAATGTGCCACAGTATGGACAGCTTCTTGGTCATCCTAGGCAAGCTTTATACATGCCCGGTTATCTGTCTGAAATGCCGTATAAGGGACGGGATTATTAA 1887 0.4171 MNLQQPGQPKSSNGYGRRKSEREGATKSENKILSGKLNASRLTSTGAVTGSKCGSYESPSHDRLVYVTTCLIGHQVKVQVKNGSIYSGIFHATNADKDFGIILKMAHLTKDGSLRGQKSGAEFVSKPPSKILIIPAKELVQVIAQDVAITRDGLPDDSHNDMHQEIMVDSLISQSRHVEQGRELKPWVPDEDDPQYPELENIFDVPWNRGWNQFETNEALFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGLHSYDDFDIDEETRFSSVCRGKHVDDSGYDENEDIVFDSHNSETFGGTFGSVTKRPGEISGGKGNDGTQTSANSSSMSSTGVDLSRSGSYDHAKQLASELPAKSYSSSDGESRIQENSISNQHGANGSTEEENLIQAEDVQLSKPEDSQAPLYLKKDVSDKGVLSPNASSYAPSSDTSSKINEKTGSHGDLTEISACGKDNGETKSVNSRGTPSGSESVGGVTASGPGLSPSSSVGSLSSEKSTLNPNAKEFKLNPNAKSFIPSPARPPTPVSDSSFYIPANVTTVPNMPGMPMGIGIGPTFTGPQPIMYNPQVAQMPSQAYFHPNVPQYGQLLGHPRQALYMPGYLSEMPYKGRDY* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2404 628 Coils Coil 242 262 - -
Apr2g2404 628 MobiDBLite consensus disorder prediction 434 460 - -
Apr2g2404 628 Gene3D - 68 136 - -
Apr2g2404 628 Pfam Ataxin 2 SM domain 61 144 IPR025852 -
Apr2g2404 628 MobiDBLite consensus disorder prediction 371 403 - -
Apr2g2404 628 Pfam Ataxin-2 C-terminal region 512 524 IPR009818 -
Apr2g2404 628 PANTHER ATAXIN-2 HOMOLOG 4 617 - -
Apr2g2404 628 PANTHER ATAXIN 2-RELATED 4 617 IPR045117 GO:0003723
Apr2g2404 628 MobiDBLite consensus disorder prediction 426 522 - -
Apr2g2404 628 MobiDBLite consensus disorder prediction 311 403 - -
Apr2g2404 628 MobiDBLite consensus disorder prediction 1 36 - -
Apr2g2404 628 MobiDBLite consensus disorder prediction 15 29 - -
Apr2g2404 628 Pfam LsmAD domain 221 291 IPR009604 -
Apr2g2404 628 MobiDBLite consensus disorder prediction 334 357 - -
Apr2g2404 628 SMART LsmAD_2 221 292 IPR009604 -
Apr2g2404 628 MobiDBLite consensus disorder prediction 470 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2404 Apr-Chr2 28675308 28682867 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2404 - - gmx:100782491 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2404 2 28675308 28682867 Apr2g2404 2 28675308 28682867 ECH
Apr2g2404 2 28675308 28682867 Apr2g2404 2 28675308 28682867 PCT