Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2283 ATGTCGTCCCAAGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGTAAGAACCCCGTTGATGGCTTTTCCGCCGGTTTGGTCGACGAAGCCAATATTTTTGAATGGAGCGTTACTATAATTGGCCCTCCCGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCATCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCAGAGATATGGCATCCCAATGTATATCCGGATGGGCGCGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTATTAAGTATAATATCAATGCTTTCTAGTCCTAATGACGAATCCCCTGCAAATGTTGAAGCTGCGAAGGAGTGGAGAGAGAGGAGAGATGAATTCAAGAAAAAGGTTAGCCGTTGTGTGCGGAAGTCACAAGAAATGTTGTGA 501 0.4431 MSSQASLLLQKQLKDLCKNPVDGFSAGLVDEANIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRERRDEFKKKVSRCVRKSQEML* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2283 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Apr2g2283 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 3 166 - -
Apr2g2283 166 Gene3D Ubiquitin Conjugating Enzyme 1 166 IPR016135 -
Apr2g2283 166 SMART ubc_7 7 164 - -
Apr2g2283 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Apr2g2283 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Apr2g2283 166 CDD UBCc 17 159 IPR000608 -
Apr2g2283 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Apr2g2283 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2283 Apr-Chr2 27863644 27868288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2283 11 131 Miscellaneous Gene Families AT3G17000 32.308 9.65e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2283 K10575 - gmx:100305813 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2283 2 27863644 27868288 Apr2g2283 2 27863644 27868288 ECH
Apr2g2283 2 27863644 27868288 Apr3g1464 3 29260423 29263922 ECH
Apr2g2283 2 27863644 27868288 Apr3g1464 3 29260423 29263922 PCT