Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2174 ATGGTGTCTGACGCCAGCAAGAAGAAGGCTGCGCAGAAGAAGGCGGCGGCGGCGGCCAAGAGAGGAGGTAAAGCGGCAGCTGCTGCTGCTTCGTCCAAAACGACGTCCGAGAAGGCAGCCGACAAGCTTGCCGACGGAATTGGGGATATTCAGATTTCCGATCGGACCTGCACCGGTGTCCTCTGCTCCCATCCTCTTTCCAGGGATATTAGGATAGAATCTCTGTCAGTTACTTTCCATGGACACGATTTGATAGTTGATTCTGATTTGGAGCTAAACTATGGAAGGCGTTATGGCTTGCTTGGATTAAATGGTTGTGGAAAATCTACCTTGCTTACGGCAATAGGTTGCCGAGAGCTACCTATTCCTGAACATATGGATATATATCACCTTACCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGATTGAGGTTGGAGAAAGAAGCAGAAACTTTAGCAGCACAGGATGATGGAGGTGGTGAAGCTCTAGAACGTGTTTATGAAAGACTTGAAGCCATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAAGCAAAGAAGACTCGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCTCGTGCTCTATTTATGAATCCGACCATTCTTTTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTTTGGCTGGAGGAGAATTTGAAGAAGTTTGACCGCATTCTGGTTGTGATTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATTCACATGCAAAACAAAAAGCTGAAGCTTTACACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTATAAATGGGAGCAGGAGCAAATTTCCTCGATGAAGGAATACATTGCCCGATTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTCACAGAGAAGGTGGTAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGGAAACTTCCCCCACCTGTCCTCCAGTTTGTAGAGGTTACATTTGGTTACACTCCTGATAATCTGATCTACAAAAACCTTGACTTTGGGGTTGATCTAGACTCTAGGATTGCCCTGGTTGGACCCAATGGAGCTGGGAAGAGTACGTTACTGAAGCTAATGACCGGGGATTTGGCTCCTATAGATGGCATGGTTCGACGTCATAATCACCTTCGAATCGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACTTGGAAATGTCTGCTCTCCAGTATATGATTAAAGAATACCCTGGAAATGAGGAAGAGAGGATGAGAGCAGCTGTTGGGAAATTTGGACTGTCTGGGAAAGCACAGGTGATGCCGATGAAGAATTTATCTGATGGGCAGAGGAGCCGTGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACTTGCTACTTTTGGATGAGCCAACTAATCATCTGGATATTGAGACAATTGACTCGTTGGCTGAAGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTTTGCGCTGATCAAACTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGGAGCACTTAAGGTCAAAGGCGGGTTTATCTGACTGA 1791 0.4539 MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKTTSEKAADKLADGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSDLELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLTREIEASDMSALEAVISCDEERLRLEKEAETLAAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRAELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLAPIDGMVRRHNHLRIAQFHQHLAEKLDLEMSALQYMIKEYPGNEEERMRAAVGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKEHLRSKAGLSD* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2174 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 575 IPR027417 -
Apr2g2174 596 SMART AAA_5 94 296 IPR003593 -
Apr2g2174 596 SMART AAA_5 406 573 IPR003593 -
Apr2g2174 596 PANTHER - 1 596 - -
Apr2g2174 596 Gene3D - 350 594 IPR027417 -
Apr2g2174 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 596 IPR003439 GO:0005524
Apr2g2174 596 Pfam ABC transporter 281 357 IPR032781 -
Apr2g2174 596 CDD ABCF_EF-3 381 573 - -
Apr2g2174 596 Gene3D - 70 334 IPR027417 -
Apr2g2174 596 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 596 - -
Apr2g2174 596 Pfam ABC transporter 88 242 IPR003439 GO:0005524
Apr2g2174 596 Pfam ABC transporter 397 528 IPR003439 GO:0005524
Apr2g2174 596 CDD ABCF_EF-3 70 287 - -
Apr2g2174 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 310 IPR003439 GO:0005524
Apr2g2174 596 Coils Coil 288 308 - -
Apr2g2174 596 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524
Apr2g2174 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 315 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2174 Apr-Chr2 26859444 26863228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2174 201 268 Calmodulin-binding Proteins AT2G36910 42.857 6.15e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2174 K06185 - gmx:100785099 1088.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2174 2 26859444 26863228 Apr2g2174 2 26859444 26863228 ECH
Apr2g2174 2 26859444 26863228 Apr3g1328 3 27726919 27731598 PCT