Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1701 ATGAATGTGATGGGATGTCTGAGGCGACCAAACTGTGTCCTTTTTGGAGGCAGAGCTAACCTGACGAAAAGCAGTGGCAGTGAGGTTTTGGCTTTACAGCAGTTCGCATGGAATGGGAAGGGTATGAAGAATCAGCATCAGCATGTGGATGCGCCTGTTGTTGTAGTCACCGGAGCCTCCAGAGGCATTGGCCGCGCTATTGCACTCTCCTTCGGTAAAGCCTCTTCCAAGGTCCTCGTCAACTATGCCACCTCATACACGCAAGCTCAGGAGGTTTCTAATTTGATTGAGGCATTTGGTGGACAAGCTCTTACTTTTGCTGGAGACGTTTCCAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCAGTGGATACATGGGGAACTGTTGATGTATTGGTAAATAATGCAGGAATTACTCGGGATGGTTTGTTAATGAGAATGAAGAAATCACAATGGCAGGACGTCATTGATCTAAATCTCACCAGTGTTTTTCTTTGCACTCAGGCAGCAGCAAAGATTATGACGATGAAGAAGAAGGGAAGGATAGTGAATATTGCATCAGTTATAGGTGTGGTTGGGAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCAGGCGTAATTGGCCTAACAAAATCTGCTGCGAGGGAATATGCTAGCAGAAACATCACTGTTAATGCGGTTGCCCCAGGGTTTATTGCATCTGATATGACTGCAAAACTAGGACAAGACATTGAGAAAAAAATATTGGAGGCAATTCCTTTAGGAAGATTTGGTCAACCTGAAGAAGTAGCTGGACTAGTGGAATTCTTGGCTCTTAGTCCTGCTGCTAATTACATCACTGGGCAGGTGTTCACTATTGATGGGGGTATGGCGATGTAA 885 0.4486 MNVMGCLRRPNCVLFGGRANLTKSSGSEVLALQQFAWNGKGMKNQHQHVDAPVVVVTGASRGIGRAIALSFGKASSKVLVNYATSYTQAQEVSNLIEAFGGQALTFAGDVSNEADVESMIKTAVDTWGTVDVLVNNAGITRDGLLMRMKKSQWQDVIDLNLTSVFLCTQAAAKIMTMKKKGRIVNIASVIGVVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTAKLGQDIEKKILEAIPLGRFGQPEEVAGLVEFLALSPAANYITGQVFTIDGGMAM* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1701 294 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 52 232 - -
Apr2g1701 294 Pfam Enoyl-(Acyl carrier protein) reductase 58 292 - -
Apr2g1701 294 PRINTS Glucose/ribitol dehydrogenase family signature 53 70 IPR002347 -
Apr2g1701 294 PRINTS Glucose/ribitol dehydrogenase family signature 128 139 IPR002347 -
Apr2g1701 294 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Apr2g1701 294 PRINTS Glucose/ribitol dehydrogenase family signature 201 220 IPR002347 -
Apr2g1701 294 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
Apr2g1701 294 PRINTS Glucose/ribitol dehydrogenase family signature 255 275 IPR002347 -
Apr2g1701 294 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 54 293 IPR011284 GO:0004316|GO:0006633|GO:0051287
Apr2g1701 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 188 216 IPR020904 GO:0016491
Apr2g1701 294 Gene3D - 51 294 - -
Apr2g1701 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 293 IPR036291 -
Apr2g1701 294 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 23 294 - -
Apr2g1701 294 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 23 294 - -
Apr2g1701 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 139 IPR002347 -
Apr2g1701 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 189 IPR002347 -
Apr2g1701 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 201 220 IPR002347 -
Apr2g1701 294 CDD BKR_SDR_c 53 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1701 Apr-Chr2 22651078 22654290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1701 47 294 Acyl Lipid Metabolism Gene Families AT1G24360 71.774 2.33e-131 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1701 K00059 - gmx:100811718 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2281 10 34939656 34943296 Apr2g1701 2 22651078 22654290 PCT