Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1588 ATGCAGAACGCGAAGCTCTTCTTCCTCTCTTTCTCTCTCCTCACTCTCTCTCTCTCCGTCGCCGCACGCCCCTTCGTCCTCGTTCTCTCTCAAGAAGACTTCAAAGACGACGCTCCCTCCGATCCCGATTCTGCCGCCGAGTGGGACGAGTTCGGCGACTCTGACACCCACAAATCCGAAGACGACCTCGACCCTGGCTCATGGCGCCCAATCTTCGAACCTTCCTCCGGAGACCCCCAACCGTTATCAGAATCCGAGGCCATGTATTACTCCGCCGTCGAGAAGCTATTGTCCGCCGACGCCACCGTCATCGAGGAAGGCGCCGGGGAGATCGAAACTGCTGCTGAATCTGGCTACCCGCCCGCGCAATCGGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGAGAAGCAAGGGAAAGGCCTTTCTCTACCACCATTTCGCCGCTGAAGGTGGCAATATGCAGTCGAAGATGGCTTTGGCTTATACGTACACGCGCCAAGATATGTTTGAAAAAGCTGTTAAACTCTATGCTGAATTGGCTGAAGTTGCGGTGAATAGTTTTTTGATTTCGAAAGATTCGCCGGTTATTGAACCCGTTAGGCTTCACAATGGAGCTGAGGAGAACAAGGAAGCGCTTAGAAAATCCAAGGGGGAAGAGGATGATGACTTTCAGATACTGGAGTATCAGGCACAGAAAGGGAATGCTGCTGCCATGTATAAAGTTGGTCTCTTTTATTATTTTGGATTGAGGGGATTGAGGCGTGATCATTCGAAGGCGCTCTCTTGGTTTTTGAAGGCTGCTTATAATGGGATGGGCTATTTGTATGTCAAAGGCTATGGCGTCGACAAGAAGAATTACACTAAAGCTAAAGAGTATTTTGAAAAGGCTGCTGACAATGAAGAGGTTGGCGGACACTATAACCTGGGTGTCATGTATCTCAAGGGGATTGGAGTGAAAAGAGATGTTAAGTTGGCATGTACGTACTTTGTGGTGGCTGCCAACCATGGTCAACCAAAGGCATTCTACCAGCTGGCTAAGATTTTCCATATTGGTGTTGGGTTCAAGAAGAATATTCCCTTGGCTACTGCATTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAATCATACTTAAAAGGTGATGTTGGCAAGGCATTTATGCTCTATTCAAGAATGGCTGAGATGGGCTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTTGACAAATATGGGGAACGAAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGCGGGCACATTCTCTGTGGTGGCAAGCCTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCGTATTACTATGGTCGGGGTACTGCCAGGGATTATGATCGAGCTGCTGAGGCCTACATGCATGCAAAATCACAATTCAATGCACAAGCCATGTTCAATCTTGGCTACATGCATGAGCATGGCCAAGGACTTCCATTTGATTTTCATCTAGCAAAGCGTTACTATGATGAGGCTTTAGAGCATGATCCTGCAGCGAAGTTGCCAGTTACACTTGCTCTTACAAGCTTGTGGGTTCGTAAGAACTATGCAGACAGTTTCTTGGTTCATATGATTGATTCATTGCCAGAAGTCTATCCTAAATTGGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAAGGAAATGCTACAATTCTCACTCTCTTTGCATGCCTGCTAACTGTGCTCTATCTCCGTGAGAGGCAGCGCAGGCAAGCTGCTGTTGTAGCTGCAGAGGGGGCCCAGCCAAATCGCCCTAACGAACTAGGCGTTCCCGCACCCATGTAG 1878 0.484 MQNAKLFFLSFSLLTLSLSVAARPFVLVLSQEDFKDDAPSDPDSAAEWDEFGDSDTHKSEDDLDPGSWRPIFEPSSGDPQPLSESEAMYYSAVEKLLSADATVIEEGAGEIETAAESGYPPAQSVLGFLWGMGLLRERSKGKAFLYHHFAAEGGNMQSKMALAYTYTRQDMFEKAVKLYAELAEVAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDDDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAAYNGMGYLYVKGYGVDKKNYTKAKEYFEKAADNEEVGGHYNLGVMYLKGIGVKRDVKLACTYFVVAANHGQPKAFYQLAKIFHIGVGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGDVGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYDRAAEAYMHAKSQFNAQAMFNLGYMHEHGQGLPFDFHLAKRYYDEALEHDPAAKLPVTLALTSLWVRKNYADSFLVHMIDSLPEVYPKLEAWVENVLLEEGNATILTLFACLLTVLYLRERQRRQAAVVAAEGAQPNRPNELGVPAPM* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1588 625 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 269 - -
Apr2g1588 625 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 268 607 - -
Apr2g1588 625 Gene3D Tetratricopeptide repeat domain 384 541 IPR011990 GO:0005515
Apr2g1588 625 Gene3D Tetratricopeptide repeat domain 272 383 IPR011990 GO:0005515
Apr2g1588 625 Gene3D Tetratricopeptide repeat domain 202 271 IPR011990 GO:0005515
Apr2g1588 625 SUPERFAMILY HCP-like 388 529 - -
Apr2g1588 625 Pfam Sel1 repeat 308 339 IPR006597 -
Apr2g1588 625 Pfam Sel1 repeat 459 481 IPR006597 -
Apr2g1588 625 Pfam Sel1 repeat 493 527 IPR006597 -
Apr2g1588 625 Pfam Sel1 repeat 122 155 IPR006597 -
Apr2g1588 625 Pfam Sel1 repeat 390 408 IPR006597 -
Apr2g1588 625 Pfam Sel1 repeat 238 273 IPR006597 -
Apr2g1588 625 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 268 607 IPR044623 GO:0030433
Apr2g1588 625 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 269 IPR044623 GO:0030433
Apr2g1588 625 MobiDBLite consensus disorder prediction 50 67 - -
Apr2g1588 625 MobiDBLite consensus disorder prediction 34 83 - -
Apr2g1588 625 SUPERFAMILY HCP-like 219 418 - -
Apr2g1588 625 Gene3D Tetratricopeptide repeat domain 103 197 IPR011990 GO:0005515
Apr2g1588 625 SMART sel1 238 274 IPR006597 -
Apr2g1588 625 SMART sel1 493 528 IPR006597 -
Apr2g1588 625 SMART sel1 305 340 IPR006597 -
Apr2g1588 625 SMART sel1 275 304 IPR006597 -
Apr2g1588 625 SMART sel1 341 376 IPR006597 -
Apr2g1588 625 SMART sel1 120 155 IPR006597 -
Apr2g1588 625 SMART sel1 457 492 IPR006597 -
Apr2g1588 625 SUPERFAMILY HCP-like 111 185 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1588 K14026 - gmx:100787823 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1588 2 21665891 21671623 Apr2g1588 2 21665891 21671623 ECH